View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3635_high_3 (Length: 449)
Name: NF3635_high_3
Description: NF3635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3635_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Complemental strand, 40516438 - 40516012
Alignment:
| Q |
18 |
gagatgaaattccaatttgctttacatatgtgattatcaaagaatccacttggtctaaacttccctttattaatgaaaggaagatcaagaaatacaaact |
117 |
Q |
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| T |
40516438 |
gagatgaaattccaatttgctttacatatgtgattatcaaagaatccacttggtctaaacttccctttattaatgaaaggaagatcaagaaatacaaact |
40516339 |
T |
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| Q |
118 |
acaagacaggatggatagccaatccaattatccaacccaccaccctcacttcaataannnnnnnnnnn-----gtgacaatgctcttcaagtaactgtgt |
212 |
Q |
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| T |
40516338 |
acaaaacaggatggatagccaatccaattatccaacccaccaccctcacttcaataattttttttttttttttgtgacaatgctcttcaagtaactgtgt |
40516239 |
T |
|
| Q |
213 |
agtgtttaattaacttagaacataagaatttcaaaatcatttcaaccaatggcttgaggtctcttttgaccaacgtgaactttatacaattatgaatcac |
312 |
Q |
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| T |
40516238 |
agtgtttaattaacttagaacataagaatttcaaaatcatttcaaccaatggcttgaggtctcttttgaccaacgtgaactatatacaattatgaatcac |
40516139 |
T |
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| Q |
313 |
ctctagtgaagcaccatttggttttagtgagggattttgattttgatactactttgtctctttgtattaagaaaagtaaaatgtgtttttgtaaatacat |
412 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40516138 |
ctatagtgaagcaccatttggttttagtgagggattttgattttgatactactttgtctctttgtattaagaaaagtaaaatgtgtttttgtaaatacat |
40516039 |
T |
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| Q |
413 |
gttaataaaatcccttctatgcctatg |
439 |
Q |
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| T |
40516038 |
gttaataaaatcccttctatgcgtatg |
40516012 |
T |
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