View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3635_high_4 (Length: 408)
Name: NF3635_high_4
Description: NF3635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3635_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 28279651 - 28279260
Alignment:
| Q |
1 |
gatggacatcatcaaaagcaacattagaaaagtacggacaatcaaagaacaagtgtttaagagtttcaaaatattaatga-ttaagatgatcatcctgaa |
99 |
Q |
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| T |
28279651 |
gatgaacaccatctaaagcaacattaaaaaagtacggacaattaaagaacaattgttgaagagtttcaaaatattaatcaattaagatgatcatcctgaa |
28279552 |
T |
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| Q |
100 |
ttaattcatgatattaggtaaataatataaggtggttatcattatacggattagcatttagcatagataaaaaatcacatataaatatattttctatttt |
199 |
Q |
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| T |
28279551 |
ttaattcatgatattaggtaaataatataaggtggttatcattatacagattagcatttagcatagataaaaaatcacatataaatatattttctatttt |
28279452 |
T |
|
| Q |
200 |
tcatataagctgtcgttttttagaggaattaggtgtcgttatatacacaataaacaattattnnnnnnnnntgttttcttatga-nnnnnnnnaacaaat |
298 |
Q |
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| T |
28279451 |
tcatataaggtgtcgttttttagtggaattaggtgtcgttatatacacaataaacagttatt-caaaaaaatgttttcttatgatttttttttaacaaac |
28279353 |
T |
|
| Q |
299 |
caaaatgaaataagattaacctgaatctttccagcacaaaatgtgttagaaagattacaataaaatacaatcagtcaaagaaagaattcaaac |
391 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28279352 |
taaaatgaaataagattaacctgaatctttctggcacaaaatgtgttagaaagattacaataaaatacaatcagtcaaagaaagaattgaaac |
28279260 |
T |
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