View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3635_high_5 (Length: 399)

Name: NF3635_high_5
Description: NF3635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3635_high_5
NF3635_high_5
[»] chr4 (4 HSPs)
chr4 (13-228)||(2873609-2873824)
chr4 (247-392)||(2873817-2873961)
chr4 (142-217)||(2901380-2901455)
chr4 (153-217)||(2883510-2883574)
[»] chr2 (3 HSPs)
chr2 (137-212)||(44214023-44214098)
chr2 (153-212)||(44237002-44237061)
chr2 (184-212)||(44226188-44226216)
[»] chr7 (2 HSPs)
chr7 (154-212)||(39334417-39334475)
chr7 (154-212)||(39568129-39568187)
[»] chr1 (1 HSPs)
chr1 (154-218)||(2164586-2164650)


Alignment Details
Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 2873609 - 2873824
Alignment:
Q  13 aatatgattatgattatgggtgaaaattgatgtccatacatgcaatggaacacccttttaatttggggattaatttaacataacttgcataatttannnn 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  2873609 aatatgattatgattatgggtgaaaattgatgtccatacatgcaatggaacacccttttaatttggggattaatttaacataacttgcataatttatttt 2873708  T
Q  113 nnnnnnnnnngtgatgcatagatttgctatctgagttatgtagaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggt 212  Q
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2873709 ttatttttttgtgatgcatagatttgctatctgagttatgtagaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggt 2873808  T
Q  213 gagaaagaaactacat 228  Q
    ||||||||||||||||    
T  2873809 gagaaagaaactacat 2873824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 247 - 392
Target Start/End: Original strand, 2873817 - 2873961
Alignment:
Q  247 aactacgttatgctatatatttctatagcatttgatgtaataatatatattcatctcaatgaattttgatatactaggcaacttcaactgaaggccaaga 346  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2873817 aactacattatgctatatatttctatagcatttgatgtaataatatatattcatctcaatgaattttgatatactaggcaacttcaactgaaggccaaga 2873916  T
Q  347 ggaaagtctgataacagactatatgctgaaggtaaataatactatt 392  Q
    ||||||||||||||| || |||||||||||||| ||||||||||||    
T  2873917 ggaaagtctgataaccgattatatgctgaaggt-aataatactatt 2873961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 2901455 - 2901380
Alignment:
Q  142 tctgagttatgtagaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggtgagaa 217  Q
    |||||||| | |||||||||||| ||||||||||| |  ||||||||||||||||||||||  |||||||| ||||    
T  2901455 tctgagttgtctagaagagaaaaggaagcaaagattaagccagacccagatattgatgtctttatgaaggtaagaa 2901380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 2883510 - 2883574
Alignment:
Q  153 tagaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggtgagaa 217  Q
    |||||||||||| |||||||| || |  |||||||||||| ||||||||| ||||||||||||||    
T  2883510 tagaagagaaaaggaagcaaatattaagccagacccagatgttgatgtcttcatgaaggtgagaa 2883574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 44214098 - 44214023
Alignment:
Q  137 tgctatctgagttatgtagaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggt 212  Q
    ||||||||||| | | ||||||||| || | |||||| ||||  || |||||||||||||||||||||||||||||    
T  44214098 tgctatctgagctttctagaagagagaaggtagcaaatatcaagcctgacccagatattgatgtctacatgaaggt 44214023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 44237061 - 44237002
Alignment:
Q  153 tagaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggt 212  Q
    ||||||||| || | |||||| ||||  || |||||||||||||||||||||||||||||    
T  44237061 tagaagagagaaggcagcaaatatcaagcctgacccagatattgatgtctacatgaaggt 44237002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 212
Target Start/End: Complemental strand, 44226216 - 44226188
Alignment:
Q  184 gacccagatattgatgtctacatgaaggt 212  Q
    |||||||||||||||||||||||||||||    
T  44226216 gacccagatattgatgtctacatgaaggt 44226188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 212
Target Start/End: Original strand, 39334417 - 39334475
Alignment:
Q  154 agaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggt 212  Q
    |||||||||||||| ||||| ||||  || || |||||||||||||| |||||||||||    
T  39334417 agaagagaaaaagatgcaaatatcaagcctgatccagatattgatgtgtacatgaaggt 39334475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 39568187 - 39568129
Alignment:
Q  154 agaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggt 212  Q
    |||||||||||||| ||||| ||||  || || |||||||||||||| |||||||||||    
T  39568187 agaagagaaaaagatgcaaatatcaagcctgatccagatattgatgtgtacatgaaggt 39568129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 2164650 - 2164586
Alignment:
Q  154 agaagagaaaaagaagcaaagatcataccagacccagatattgatgtctacatgaaggtgagaaa 218  Q
    |||||||| || ||||||||||| | |||||| || ||| |||||| ||| ||||||||||||||    
T  2164650 agaagagagaaggaagcaaagattaaaccagatcctgatgttgatgcctatatgaaggtgagaaa 2164586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University