View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3635_high_7 (Length: 317)
Name: NF3635_high_7
Description: NF3635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3635_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 311
Target Start/End: Complemental strand, 6814242 - 6813945
Alignment:
| Q |
19 |
gtatatctgtggccatggaattatttccaaagaaaattgcagctgctgtatttgttacagctttcatgccttctcctgatctaagttacttgagtctact |
118 |
Q |
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| T |
6814242 |
gtatatctgtggccatggaattatttccaaagaaaattgcagctgctgtatttgttacagctttcatgccttctcctgatctaagctacttgagtctact |
6814143 |
T |
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| Q |
119 |
ccaagaggtacttgactatccttattttgatctttctcatatttcttatgtaatagttatcatcatctttggcaacatatgcatgtacattcatatgtga |
218 |
Q |
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| T |
6814142 |
ccaagaggtacttgactatccttattttgatctttctcatatttcttatgtaatagttatcatcatctttggcaacatatgcatgtacatgcatatgtga |
6814043 |
T |
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| Q |
219 |
ctcgtgtatccagtgaggagaacat---------aaattcaaaagtaatatagttgtggtgaataaaatttgatttctatgtataatctaaagaattatc |
309 |
Q |
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| T |
6814042 |
c----gtatctagtgaggagaacataaattcaaaaaattcaaaaataaaatagttggggtgaataaaatttgatttctatgtataatctaaagaattatc |
6813947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 6807457 - 6807300
Alignment:
| Q |
19 |
gtatatctgtggccatggaattatttccaaagaaaattgcagctgctgtatttgttacagctttcatgccttctcctgatctaagttacttgagtctact |
118 |
Q |
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| T |
6807457 |
gtatatctgtggccatggaattatttccaaagaaaattgcagctgctgtatttgttacagctttcatgccttctcctgatctaagctacttgagtctact |
6807358 |
T |
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| Q |
119 |
ccaagaggtacttgactatccttattttgatctttctcatatttcttatgtaatagtt |
176 |
Q |
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| T |
6807357 |
ccaagaggtacttgattatccttattttgatctttctcatatttcatagttaatagtt |
6807300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 6823439 - 6823328
Alignment:
| Q |
19 |
gtatatctgtggccatggaattatttccaaagaaaattgcagctgctgtatttgttacagctttcatgccttctcctgatctaagttacttgagtctact |
118 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | | ||| ||| || |
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| T |
6823439 |
gtatatctgtggccatggaattatttcctaagaaaattgcagctgctgtatttgtcacagctttcatgccttctcctgatctaagcttcctgactcttct |
6823340 |
T |
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| Q |
119 |
ccaagaggtact |
130 |
Q |
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| T |
6823339 |
ccaagaggtact |
6823328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 291
Target Start/End: Complemental strand, 6806887 - 6806781
Alignment:
| Q |
193 |
acatatgcatgtacattcatatgtgactcgtgtatccagtgaggagaacataaattc--------aaaagtaatatagttgtggtgaataaaatttgatt |
284 |
Q |
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|||||||||||||||| |||||||||||||||||| | |||||||||| ||||||| |||| ||||||||||| |||||||||||||||||| |
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| T |
6806887 |
acatatgcatgtacatgcatatgtgactcgtgtatttaatgaggagaacgtaaattcaaaaatgcaaaaataatatagttggggtgaataaaatttgatt |
6806788 |
T |
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| Q |
285 |
tctatgt |
291 |
Q |
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||||||| |
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| T |
6806787 |
tctatgt |
6806781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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