View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3635_low_1 (Length: 664)

Name: NF3635_low_1
Description: NF3635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3635_low_1
NF3635_low_1
[»] chr3 (14 HSPs)
chr3 (407-658)||(11020180-11020432)
chr3 (36-230)||(11020474-11020670)
chr3 (39-183)||(11027359-11027504)
chr3 (487-658)||(42340277-42340448)
chr3 (490-657)||(53497051-53497218)
chr3 (560-658)||(27608903-27609001)
chr3 (560-658)||(34497372-34497470)
chr3 (486-658)||(55199526-55199698)
chr3 (568-627)||(647194-647253)
chr3 (604-658)||(27747685-27747739)
chr3 (1-38)||(11020774-11020811)
chr3 (561-658)||(24176860-24176957)
chr3 (464-557)||(647312-647406)
chr3 (1-38)||(11036788-11036825)
[»] chr7 (10 HSPs)
chr7 (464-658)||(29200955-29201150)
chr7 (464-658)||(16731925-16732120)
chr7 (464-658)||(17710059-17710254)
chr7 (486-658)||(22289256-22289428)
chr7 (486-658)||(9328602-9328774)
chr7 (549-657)||(16098568-16098676)
chr7 (563-658)||(30493610-30493705)
chr7 (579-661)||(24139139-24139221)
chr7 (562-658)||(3601743-3601839)
chr7 (517-658)||(3275080-3275221)
[»] chr4 (18 HSPs)
chr4 (486-658)||(37245852-37246024)
chr4 (486-658)||(29655666-29655838)
chr4 (465-658)||(43840306-43840501)
chr4 (486-658)||(32577048-32577220)
chr4 (464-658)||(49951305-49951500)
chr4 (486-658)||(2064868-2065040)
chr4 (486-658)||(28426198-28426370)
chr4 (464-658)||(28537787-28537980)
chr4 (486-658)||(49119400-49119572)
chr4 (486-658)||(51734972-51735143)
chr4 (486-658)||(55735024-55735196)
chr4 (498-658)||(26422602-26422762)
chr4 (486-627)||(56065644-56065785)
chr4 (563-658)||(51259529-51259624)
chr4 (486-658)||(41835311-41835483)
chr4 (486-627)||(21321542-21321685)
chr4 (495-658)||(47226330-47226493)
chr4 (561-658)||(44936082-44936179)
[»] chr5 (14 HSPs)
chr5 (464-658)||(25730800-25730995)
chr5 (486-658)||(8388101-8388273)
chr5 (486-658)||(20204970-20205142)
chr5 (464-658)||(15988749-15988944)
chr5 (486-663)||(41940732-41940908)
chr5 (486-658)||(26597457-26597629)
chr5 (486-658)||(27532906-27533078)
chr5 (486-657)||(4268114-4268285)
chr5 (464-658)||(12660308-12660503)
chr5 (495-657)||(27292458-27292620)
chr5 (486-623)||(22767292-22767429)
chr5 (486-658)||(34652254-34652426)
chr5 (486-627)||(11375544-11375685)
chr5 (562-658)||(32632606-32632702)
[»] chr6 (8 HSPs)
chr6 (489-658)||(15605994-15606163)
chr6 (464-658)||(28107131-28107326)
chr6 (486-658)||(30801991-30802163)
chr6 (486-658)||(19690879-19691051)
chr6 (464-658)||(14680154-14680349)
chr6 (486-627)||(15053206-15053347)
chr6 (464-513)||(29368201-29368251)
chr6 (584-658)||(34104465-34104539)
[»] chr8 (12 HSPs)
chr8 (486-658)||(7127238-7127410)
chr8 (486-658)||(185591-185762)
chr8 (486-657)||(23853947-23854118)
chr8 (486-627)||(478087-478228)
chr8 (486-627)||(8451154-8451295)
chr8 (562-658)||(598237-598333)
chr8 (464-658)||(13415015-13415210)
chr8 (562-658)||(40588730-40588826)
chr8 (571-658)||(11870364-11870451)
chr8 (563-658)||(33642764-33642859)
chr8 (602-658)||(3606739-3606795)
chr8 (480-512)||(9496791-9496823)
[»] chr1 (10 HSPs)
chr1 (486-658)||(25682666-25682838)
chr1 (472-657)||(44527253-44527439)
chr1 (486-658)||(36733711-36733883)
chr1 (486-658)||(44602767-44602939)
chr1 (486-658)||(48949724-48949896)
chr1 (486-658)||(51113330-51113502)
chr1 (562-658)||(2885314-2885410)
chr1 (562-658)||(5609430-5609526)
chr1 (464-591)||(48166229-48166357)
chr1 (561-657)||(52109543-52109639)
[»] chr2 (10 HSPs)
chr2 (464-658)||(88551-88746)
chr2 (486-655)||(34695907-34696076)
chr2 (486-655)||(34718319-34718488)
chr2 (567-663)||(26198778-26198874)
chr2 (560-658)||(1417981-1418079)
chr2 (535-660)||(22845600-22845725)
chr2 (562-658)||(9710046-9710142)
chr2 (486-658)||(12130638-12130810)
chr2 (563-658)||(13109869-13109964)
chr2 (564-658)||(14827173-14827267)
[»] scaffold0446 (1 HSPs)
scaffold0446 (486-627)||(201-342)
[»] scaffold0922 (1 HSPs)
scaffold0922 (570-658)||(264-352)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 407 - 658
Target Start/End: Complemental strand, 11020432 - 11020180
Alignment:
Q  407 atgttggtagatgctgactgtgcaaagttgtctatgtggcacacacatgacatttaactcaaatgaaatggcagtggacaa-tatgacagttttggaggg 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||| ||||||| ||||||||||    
T  11020432 atgttggtagatgctgactgtgcaaagttgtctatgtggcacacacttgacatttaactcaaatgaaatgaaagtggacaaatatgacacttttggaggg 11020333  T
Q  506 ggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttagctactcgagtgtaaggtcta 605  Q
    |||| || |||||||| ||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||    
T  11020332 ggagacatcagctttactcgatgctatttactttgctgatgggaacaaatggaactgggttgtcttcgagtctgacttaactactccagtgtaaggtcta 11020233  T
Q  606 tcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||||||||||||||||||| | || |||||||||||||||||||||||||    
T  11020232 tcgtctccgggccatggtgattcagaattctgtgctattgtttctagtattat 11020180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 36 - 230
Target Start/End: Complemental strand, 11020670 - 11020474
Alignment:
Q  36 ccaaaatcacaattgtccaactatttatccagtcttgttaaggaacaaagtgatgttggagaagttgcattgtctcttaccgtcacattatctattgatc 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11020670 ccaaaatcacaattgtccaactatttatccagtcttgttaaggaacaaagtgatgttggagaagttgcattatctcttaccgtcacattatctattgatc 11020571  T
Q  136 acaacgagggacatgacacatgtgaactagataaaatggattgattataaatctttagttgatgt--gaaaaggtcatgtcacgggtagatgaaagg 230  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||    
T  11020570 acaacgagggacatgacacatgtgaactagataaaatagattgattataaatctttagttgatgtgagaaaaggtcacgtcacgggtagatgaaagg 11020474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 39 - 183
Target Start/End: Complemental strand, 11027504 - 11027359
Alignment:
Q  39 aaatcacaattgtccaa-ctatttatccagtcttgttaaggaacaaagtgatgttggagaagttgcattgtctcttaccgtcacattatctattgatcac 137  Q
    ||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||    
T  11027504 aaatcacaattgtcccatctatttatcgagtcttgttaaggaacaaagtgatgttggagaagttgcattgtattttaccgtcacattatctactgatcac 11027405  T
Q  138 aacgagggacatgacacatgtgaactagataaaatggattgattat 183  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  11027404 aacgagggacatgacacatgtgaaccagataaaatggattgattat 11027359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 487 - 658
Target Start/End: Complemental strand, 42340448 - 42340277
Alignment:
Q  487 atatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttagc 586  Q
    |||||||||| |||||||||||||||| |||  || ||||||  ||| |||||||||||| ||||| ||||  | | |||||||||||||| |||| |||    
T  42340448 atatgacagtgttggagggggaggcaatagccctactcgatgtcattcactttgcagatgtgaacagatgggaccgagttgtcttcgagtcagactcagc 42340349  T
Q  587 tactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    ||||  |||| ||| ||| |||||||||||||||||||||| | || ||| |||||||||||||| ||||||    
T  42340348 tactttagtgcaagctctgtcgtctccgggccatggtgattcagaattctatgctattgtttctaatattat 42340277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 490 - 657
Target Start/End: Original strand, 53497051 - 53497218
Alignment:
Q  490 tgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttagctac 589  Q
    |||||||||| ||||||||||||  ||| ||| | || ||  || ||||||| ||||  |||| ||||  | |||||||||||||||| |||| | ||||    
T  53497051 tgacagtttttgagggggaggcagtagccttactagaggcccttcactttgctgatgctaacagatgggaccgggttgtcttcgagtccgactcatctac 53497150  T
Q  590 tcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtatta 657  Q
    ||  ||| ||| ||||||||||||||||||||||||||   || ||| ||||||||||||||||||||    
T  53497151 tcttgtgcaagctctatcgtctccgggccatggtgattcggaattctatgctattgtttctagtatta 53497218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 560 - 658
Target Start/End: Complemental strand, 27609001 - 27608903
Alignment:
Q  560 ctgggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||||||||||||||| |||| |||||||| |||| |||  |||||||||||||||||||||||||   || | | |||||||||||||||||||||    
T  27609001 ctgggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcggaattttatgctattgtttctagtattat 27608903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 560 - 658
Target Start/End: Complemental strand, 34497470 - 34497372
Alignment:
Q  560 ctgggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||||||||||||||| |||| |||||||| |||| |||  |||||||||||||||||||||||||   || | | |||||||||| ||||||||||    
T  34497470 ctgggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcggaattttatgctattgttcctagtattat 34497372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 486 - 658
Target Start/End: Original strand, 55199526 - 55199698
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    |||||||||||||||||||||||||||   || ||| ||||||| ||| ||||||  | ||  |||| ||||  | ||||||||||| |||| |||| ||    
T  55199526 aatatgacagttttggagggggaggcagttgccttactcgatgccattcactttgttgttggaaacagatgggaccgggttgtcttcaagtccgactcag 55199625  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    ||||||  ||| |||  ||||||||| |||| ||||||||||   || | | |||||||||||||||||||||    
T  55199626 ctactctggtgcaagcgctatcgtctacgggtcatggtgattcggaattttatgctattgtttctagtattat 55199698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 568 - 627
Target Start/End: Complemental strand, 647253 - 647194
Alignment:
Q  568 tcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatt 627  Q
    ||||||||||||||| | |||||| |||| ||| ||||||||||||||||||||||||||    
T  647253 tcttcgagtctgactcatctactctagtgcaagctctatcgtctccgggccatggtgatt 647194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 604 - 658
Target Start/End: Complemental strand, 27747739 - 27747685
Alignment:
Q  604 tatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||||||||||||||||||||| |||| ||| ||||||||||| |||||||||    
T  27747739 tatcgtctccgggccatggtgattcaaaattctatgctattgtttttagtattat 27747685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 11020811 - 11020774
Alignment:
Q  1 agcaactgtagagattagtttaatgagcagtaaaacca 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11020811 agcaactgtagagattagtttaatgagcagtaaaacca 11020774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 561 - 658
Target Start/End: Original strand, 24176860 - 24176957
Alignment:
Q  561 tgggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||||||||||||||||||  | |||||| |||| ||| ||||||||||| ||| ||||||||||   || |||  |||||||| |||||||||||    
T  24176860 tgggttgtcttcgagtctgacacaactactctagtgcaagctctatcgtctctgggtcatggtgattcggaattctaagctattgtatctagtattat 24176957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 464 - 557
Target Start/End: Complemental strand, 647406 - 647312
Alignment:
Q  464 ctcaaatgaaatggcagtggac-aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatgg 557  Q
    |||||| |||||||||| || | |||||||||||| |||||||||||||| |||| ||| ||||||  ||| ||||||| |||| ||||| ||||    
T  647406 ctcaaacgaaatggcagcgggctaatatgacagttatggagggggaggcagcagccttactcgatgtcattcactttgctgatgtgaacagatgg 647312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 11036825 - 11036788
Alignment:
Q  1 agcaactgtagagattagtttaatgagcagtaaaacca 38  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  11036825 agcaactgtagagattagtttaaggagtagtaaaacca 11036788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 464 - 658
Target Start/End: Complemental strand, 29201150 - 29200955
Alignment:
Q  464 ctcaaatgaaatggcagtggacaa-tatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctg 562  Q
    |||||| |||||| ||| |||||| ||||||||||||||||||||||| | ||  |||| | ||||  ||| ||||||| |||| ||||| |||||   |    
T  29201150 ctcaaacgaaatgacagcggacaaatatgacagttttggagggggaggtagcatgtttacttgatgtcattcactttgctgatgtgaacagatggaaacg 29201051  T
Q  563 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||||||||||||||||| |||||||| |||| ||| ||||||||||| |||||||||||||| | || ||| |||||||||||||||||||||    
T  29201050 ggttgtcttcgagtctgactcagctactctagtgcaagctctatcgtctctgggccatggtgattcagaattctatgctattgtttctagtattat 29200955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 464 - 658
Target Start/End: Original strand, 16731925 - 16732120
Alignment:
Q  464 ctcaaatgaaatggcagtggacaa-tatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctg 562  Q
    |||||| |||||||||| || ||| ||||||||| |||||||||||||||  ||| ||| |||| || ||| ||| ||| |||| ||||| ||||| | |    
T  16731925 ctcaaacgaaatggcagagggcaaatatgacagtattggagggggaggcagtagccttactcgaggccattcactctgctgatgcgaacagatggaaccg 16732024  T
Q  563 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
     |||||||||||||| ||||   |||||| |||| ||| |||||| ||||||||||||||||||| | || ||| |||||||||||||||||||||    
T  16732025 agttgtcttcgagtccgactcgtctactctagtgcaagctctatcatctccgggccatggtgattcagaattctctgctattgtttctagtattat 16732120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 464 - 658
Target Start/End: Original strand, 17710059 - 17710254
Alignment:
Q  464 ctcaaatgaaatggcagtggacaa-tatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctg 562  Q
    |||||| |||||||||| || ||| ||||||||| |||||||||||||||  ||| ||| |||| || ||| ||| ||| |||| ||||| ||||| | |    
T  17710059 ctcaaacgaaatggcagagggcaaatatgacagtattggagggggaggcagtagccttactcgaggccattcactctgctgatgcgaacagatggaaccg 17710158  T
Q  563 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
     |||||||||||||| ||||   |||||| |||| ||| |||||| ||||||||||||||||||| | || ||| |||||||||||||||||||||    
T  17710159 agttgtcttcgagtccgactcgtctactctagtgcaagctctatcatctccgggccatggtgattcagaattctctgctattgtttctagtattat 17710254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 486 - 658
Target Start/End: Original strand, 22289256 - 22289428
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    |||||||||||||||||||||||||     || ||| ||||||| ||| ||||||| | || ||||||||||  | ||| |||||||||||| |||| ||    
T  22289256 aatatgacagttttggagggggaggtggttgccttactcgatgccattcactttgccgttgggaacaaatgggaccgggctgtcttcgagtccgactcag 22289355  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||| |||| |||  ||||||||||||||||||||||||| | || | | |||||||||||||||||||||    
T  22289356 ctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattat 22289428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 486 - 658
Target Start/End: Complemental strand, 9328774 - 9328602
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    |||||||| ||||||||||||||||||  ||| ||| ||| ||||||| ||||||| ||||  |||| ||||  | |||||||||| ||||||||||  |    
T  9328774 aatatgactgttttggagggggaggcagtagccttactcgctgctattcactttgctgatgtaaacagatgggaccgggttgtcttggagtctgactctg 9328675  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
     ||||| |||| ||| |||||||||  |||| |||||| ||| | || ||| |||  ||||||||||||||||    
T  9328674 atactctagtgcaagctctatcgtcagcgggacatggtaattcagaattctatgcgtttgtttctagtattat 9328602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 549 - 657
Target Start/End: Original strand, 16098568 - 16098676
Alignment:
Q  549 aacaaatggatctgggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgttt 648  Q
    |||||||||  | |||||||||||||||| |||| | |||||| |||  ||| || ||||||||||||||||||||||| | || ||| || ||||||||    
T  16098568 aacaaatgggaccgggttgtcttcgagtccgactcatctactctagtacaagctccatcgtctccgggccatggtgattcagaattctatgatattgttt 16098667  T
Q  649 ctagtatta 657  Q
    |||||||||    
T  16098668 ctagtatta 16098676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 563 - 658
Target Start/End: Complemental strand, 30493705 - 30493610
Alignment:
Q  563 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    ||||||||||||||| |||| |  ||||| |||| ||| |||||||||| ||||||||||||||| | || | | ||||||||||| |||||||||    
T  30493705 ggttgtcttcgagtccgactcaattactctagtgcaagctctatcgtcttcgggccatggtgattcagaattttatgctattgtttatagtattat 30493610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 579 - 661
Target Start/End: Original strand, 24139139 - 24139221
Alignment:
Q  579 gacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattatcta 661  Q
    |||| |||||||| |||| ||| ||| ||||||||||| |||| |||||| ||| | | ||||||||||||||||||||||||    
T  24139139 gactcagctactctagtgcaagctctgtcgtctccgggtcatgttgatttgaaattttatgctattgtttctagtattatcta 24139221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 562 - 658
Target Start/End: Original strand, 3601743 - 3601839
Alignment:
Q  562 gggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    ||||||| |||||||| |||| | |||||| |||| ||| | ||||||||| || ||||||||||| | || | | |||||||||||||||||||||    
T  3601743 gggttgttttcgagtccgactcatctactctagtgcaagctttatcgtctctggaccatggtgattcagaattttatgctattgtttctagtattat 3601839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 517 - 658
Target Start/End: Original strand, 3275080 - 3275221
Alignment:
Q  517 ctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccggg 616  Q
    ||||| || |||||||| ||||||| | || ||||| || |  |||||||||||||||||| |||| |||||||| |||| |||  ||||| ||||  ||    
T  3275080 ctttactcaatgctattcactttgctgttgggaacatataggactgggttgtcttcgagtccgactcagctactctagtgcaagcgctatcatctctagg 3275179  T
Q  617 ccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    ||| | ||||| | || | | ||||||||||| |||||||||    
T  3275180 ccacgatgattcataattttatgctattgtttttagtattat 3275221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 486 - 658
Target Start/End: Complemental strand, 37246024 - 37245852
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    |||||||||||||||||||||||||||  ||| ||| ||||||||||| |||||||  ||| ||||| ||||  | |||||||||||||||||||||  |    
T  37246024 aatatgacagttttggagggggaggcagtagccttactcgatgctattcactttgcttatgtgaacagatgggaccgggttgtcttcgagtctgactctg 37245925  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||  |||| ||| ||| ||||||| |||||||||||||| | || ||| |||||||||||||||||||||    
T  37245924 ctactttagtgcaagctctttcgtctctgggccatggtgattcagaattctatgctattgtttctagtattat 37245852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 486 - 658
Target Start/End: Complemental strand, 29655838 - 29655666
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    |||||||| ||||||||||| ||||||  ||| ||| ||||||  ||| ||||||| |||| ||||| ||||| | | |||||||||||||||||||  |    
T  29655838 aatatgactgttttggagggagaggcagtagccttactcgatgtcattcactttgctgatgtgaacagatggaaccgtgttgtcttcgagtctgactacg 29655739  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||| |||| ||| |||||| ||| ||||||||||||||| | || ||| || ||||||||||||||||||    
T  29655738 ctactctagtgcaagctctatcatcttcgggccatggtgattcagaattctatgttattgtttctagtattat 29655666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 465 - 658
Target Start/End: Complemental strand, 43840501 - 43840306
Alignment:
Q  465 tcaaatgaaatggcagtggacaa-tatgacagttttggagggggaggcaacagc-tttattcgatgctatttactttgcagatgagaacaaatggatctg 562  Q
    ||||| |||||||||| |||||| ||||||||| |||||||||||| ||||| | |||| ||||||| ||| ||||||| |||| |||||||||   | |    
T  43840501 tcaaacgaaatggcagcggacaaatatgacagtgttggagggggagacaacaacctttactcgatgccattcactttgctgatgtgaacaaatgagaccg 43840402  T
Q  563 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    | ||||||||||||  |||| |||||||| | || ||| |||||||||| ||| |||||||||||   || ||| |||||||||||||||||||||    
T  43840401 gtttgtcttcgagttcgactcagctactctaatgcaagctctatcgtcttcggaccatggtgattcggaattctatgctattgtttctagtattat 43840306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 486 - 658
Target Start/End: Complemental strand, 32577220 - 32577048
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    |||||||| |||||||||||||||| |  ||| ||| ||| ||||||||||||||| ||||  |||| ||||  |||||||||||||||||||||||  |    
T  32577220 aatatgactgttttggagggggaggtactagccttactcgctgctatttactttgctgatgtaaacatatgggactgggttgtcttcgagtctgactctg 32577121  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||| |||| ||| || ||||||  |||| |||||||||| | || ||| ||| ||||||| |||||||||    
T  32577120 ctactctagtgcaagctcaatcgtcagcgggacatggtgattcagaattctatgcgattgtttatagtattat 32577048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 464 - 658
Target Start/End: Original strand, 49951305 - 49951500
Alignment:
Q  464 ctcaaatgaaatggcagtggacaa-tatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctg 562  Q
    |||||| |||||||||| || ||| ||||||||| |||||||||||||||  ||| ||| |||| ||  || ||||||| |||| ||||| ||||| | |    
T  49951305 ctcaaacgaaatggcagcgggcaaatatgacagtattggagggggaggcagtagccttactcgaggcccttcactttgctgatgcgaacagatggaaccg 49951404  T
Q  563 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
     |||||||||||||| ||||   |||||| |||| ||| | |||| ||| |||||| |||||||| | || ||| |||||||||||||||||||||    
T  49951405 agttgtcttcgagtccgactcgtctactctagtgcaagctttatcatcttcgggccgtggtgattcagaattctctgctattgtttctagtattat 49951500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 486 - 658
Target Start/End: Original strand, 2064868 - 2065040
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    ||||||||||| ||| |||||||||||  ||| ||| |||| ||  || ||||||| |||||||||| |||||   |||||||||| ||||| |||| |     
T  2064868 aatatgacagtattgaagggggaggcagtagccttactcgacgcccttcactttgctgatgagaacagatggagtcgggttgtctttgagtcggactcat 2064967  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||| ||   ||| |||||||||||| || ||||||||||  ||| | | |||||||||||||||||||||    
T  2064968 ctactctagcccaagctctatcgtctccaggtcatggtgattcgaaattatatgctattgtttctagtattat 2065040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 486 - 658
Target Start/End: Original strand, 28426198 - 28426370
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    |||||||| ||||||||||||||||||  ||| ||| ||| ||||||| ||||||| ||||  |||| ||||  | ||||||||||| |||||||||  |    
T  28426198 aatatgactgttttggagggggaggcagtagccttactcgctgctattcactttgctgatgtaaacagatgggaccgggttgtcttcaagtctgactctg 28426297  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
     ||||| ||||  || |||||||||  |||| |||||| ||||| || | | ||| |||||||||||||||||    
T  28426298 atactctagtgccagctctatcgtcagcgggacatggtaatttagaattatatgcgattgtttctagtattat 28426370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 464 - 658
Target Start/End: Complemental strand, 28537980 - 28537787
Alignment:
Q  464 ctcaaatgaaatggcagtgg-acaatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctg 562  Q
    |||||| |||||||||| || | ||||||| |||||  ||||||||||||  ||| ||| |||| ||  || ||||||  |||| ||||| ||||  | |    
T  28537980 ctcaaacgaaatggcagcgggaaaatatgatagttt--gagggggaggcagtagccttactcgaggcccttcactttgttgatgcgaacagatgggaccg 28537883  T
Q  563 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||| ||| |||| |||| | |||||  |||| ||| ||||||||||| |||||||||||||| |||| ||| |||||||||||||||||||||    
T  28537882 ggttgtgttcaagtccgactcatctactttagtgcaagctctatcgtctctgggccatggtgattcaaaattctatgctattgtttctagtattat 28537787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 486 - 658
Target Start/End: Complemental strand, 49119572 - 49119400
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    |||||||| ||||||||||||||||||  ||| ||| ||| ||||||| ||||||| ||||  |||| ||||  | ||||||||||| |||||||||  |    
T  49119572 aatatgactgttttggagggggaggcagtagccttactcgctgctattcactttgctgatgtaaacagatgggaccgggttgtcttcaagtctgactctg 49119473  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
     ||||| ||||  || |||||||||  |||| |||||| ||||| || | | ||| |||||||||||||||||    
T  49119472 atactctagtgccagctctatcgtcagcgggacatggtaatttagaattatatgcgattgtttctagtattat 49119400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 486 - 658
Target Start/End: Complemental strand, 51735143 - 51734972
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    |||||||||||||||||||||||||||  ||| ||| ||||||| ||| ||||||| |||| ||| | || |  | | |||||||||||||| | ||       
T  51735143 aatatgacagttttggagggggaggcagtagccttactcgatgccattcactttgctgatgtgaatagataggac-gagttgtcttcgagtcaggctcct 51735045  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||| |||| ||| ||||||||||| || ||||||||||| | || ||| || ||||||||||||||||||    
T  51735044 ctactctagtgcaagctctatcgtctctggaccatggtgattcataattctatgatattgtttctagtattat 51734972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 486 - 658
Target Start/End: Original strand, 55735024 - 55735196
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    ||||||||||| |||||||||||||||  ||| ||| |||| ||  || ||||||  | || ||||| ||||| | ||||| | |||||||| || | |     
T  55735024 aatatgacagtattggagggggaggcagtagccttactcgaggcccttcactttgttgttgcgaacacatggaaccgggttattttcgagtccgattcat 55735123  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||| |||| ||| |||||||||| ||| ||||||||||| | || ||| |||||||||||||||||||||    
T  55735124 ctactctagtgcaagctctatcgtcttcggaccatggtgattcagaattctatgctattgtttctagtattat 55735196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 498 - 658
Target Start/End: Complemental strand, 26422762 - 26422602
Alignment:
Q  498 ttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatgg-atctgggttgtcttcgagtctgacttagctactcgagtg 596  Q
    |||||| ||||||||  ||| ||| ||||||||||||||||||| ||||  |||| |||| ||| |||||||||||||||||||||  | ||||| ||||    
T  26422762 ttggagagggaggcagtagccttactcgatgctatttactttgctgatgtaaacagatgggatc-gggttgtcttcgagtctgactctgatactctagtg 26422664  T
Q  597 taaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
     ||| |||||||||  |||| ||| |||||| | || ||| ||| ||||||| |||||||||    
T  26422663 caagctctatcgtcagcgggacatagtgattcagaattctatgcgattgtttttagtattat 26422602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 486 - 627
Target Start/End: Original strand, 56065644 - 56065785
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    |||||||||||||||||||||||||||   || ||| ||||||| ||| ||||||| | || ||| | ||||  | |||||||||||||||| |||| ||    
T  56065644 aatatgacagttttggagggggaggcagttgccttactcgatgccattcactttgctgttgggaatatatgggaccgggttgtcttcgagtccgactcag 56065743  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatt 627  Q
    |||||| |||| |||  ||||| ||||| | |||||||||||    
T  56065744 ctactctagtgcaagcgctatcatctccagaccatggtgatt 56065785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 563 - 658
Target Start/End: Complemental strand, 51259624 - 51259529
Alignment:
Q  563 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    ||||||||||||||| |||| |||||||| |||| |||  ||||||||| ||||||||||||||| | || | | || ||||||||||||||||||    
T  51259624 ggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtcttcgggccatggtgattcagaattttatgttattgtttctagtattat 51259529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 486 - 658
Target Start/End: Complemental strand, 41835483 - 41835311
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    ||||||||||||||||||||||| |||  ||| ||| ||||  |  || | ||||| ||||  |||| ||||  | |||||||||||||||  || | |     
T  41835483 aatatgacagttttggagggggatgcagtagccttactcgagacccttcattttgcggatgcaaacagatgggaccgggttgtcttcgagttcgattcat 41835384  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||| |||| ||   |||||||||||||||||||||||||   ||  || |||||||||||||||||||||    
T  41835383 ctactctagtgcaaacgctatcgtctccgggccatggtgattcggaatcctatgctattgtttctagtattat 41835311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 486 - 627
Target Start/End: Original strand, 21321542 - 21321685
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    |||||||||||||||||||||||| ||| ||| ||| |||| ||  || ||||| | ||||  |||| ||||  | |||||||||||||||| |||| |     
T  21321542 aatatgacagttttggagggggagacaatagccttactcgaggcccttcacttttctgatgctaacagatgggaccgggttgtcttcgagtccgactcat 21321641  T
Q  586 ctactcgagtgtaa--ggtctatcgtctccgggccatggtgatt 627  Q
    |||||| |||| ||  | ||||| ||||| ||| ||||||||||    
T  21321642 ctactctagtgcaattgctctattgtctcagggtcatggtgatt 21321685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 495 - 658
Target Start/End: Complemental strand, 47226493 - 47226330
Alignment:
Q  495 gttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatg-gatctgggttgtcttcgagtctgacttagctactcga 593  Q
    |||||||||||||||| || ||  ||| |||| ||| || ||||||| |||| ||||| ||| |||| | ||||| |||||||| |||| | |||||  |    
T  47226493 gttttggagggggaggtaatagtcttactcgaggcttttcactttgctgatgcgaacagatgagatc-gagttgtgttcgagtccgactcatctacttta 47226395  T
Q  594 gtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    | | ||| |||||||||| | ||||||||||||| | |  | | |||||||||||||||||||||    
T  47226394 gagcaagctctatcgtcttcaggccatggtgattcagatttatatgctattgtttctagtattat 47226330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 658
Target Start/End: Complemental strand, 44936179 - 44936082
Alignment:
Q  561 tgggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||||| |||||||| |||| |  ||||| |||| ||  |||||||| | ||||||| ||||||||| || ||| || ||||||||||| ||||||    
T  44936179 tgggttgtgttcgagtccgactcatttactctagtgcaaactctatcgttttcgggccacggtgatttagaattctatgttattgtttctattattat 44936082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 5e-30; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 464 - 658
Target Start/End: Original strand, 25730800 - 25730995
Alignment:
Q  464 ctcaaatgaaatggcagtggacaa-tatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctg 562  Q
    |||||| |||||||||| || ||| |||||||||||||||||||||||||  ||| ||| |||| ||  || ||||||| |||| ||||| ||||  |||    
T  25730800 ctcaaacgaaatggcagcgggcaaatatgacagttttggagggggaggcagtagccttactcgaggcccttcactttgctgatgcgaacagatgggactg 25730899  T
Q  563 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
     |||||||||||||| |||| | |||||| |||| ||| ||||||||||| ||| |||||||||| | || ||| || ||||||||||||||||||    
T  25730900 agttgtcttcgagtccgactcatctactctagtgcaagctctatcgtctcagggtcatggtgattaagaattctatgttattgtttctagtattat 25730995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 486 - 658
Target Start/End: Original strand, 8388101 - 8388273
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    |||||||||||||||||||||||||||   || ||| ||||||| ||| ||||||| | || ||||| ||||  | |||||||||||||||| |||| ||    
T  8388101 aatatgacagttttggagggggaggcagttgccttactcgatgccattcactttgcggttgggaacagatgggaccgggttgtcttcgagtccgactcag 8388200  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||| |||| |||  ||||||||||| ||||||||||||| | || | | |||||||||||| ||||||||    
T  8388201 ctactctagtgcaagcgctatcgtctccaggccatggtgattcagaattttatgctattgtttccagtattat 8388273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 486 - 658
Target Start/End: Original strand, 20204970 - 20205142
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    ||||||||||| |||||||||||||||  ||| ||| |||| || ||| ||||||  | || ||||| ||||| | | |||||||||||||| |||| |     
T  20204970 aatatgacagtattggagggggaggcagtagccttactcgaggccattcactttgttgttgcgaacagatggaaccgagttgtcttcgagtccgactcat 20205069  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||| |||| ||| |||||| |||||||| |||||||||| |||| ||| |||||||||||||||||||||    
T  20205070 ctactctagtgcaagctctatcctctccgggtcatggtgattcaaaattctatgctattgtttctagtattat 20205142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 464 - 658
Target Start/End: Complemental strand, 15988944 - 15988749
Alignment:
Q  464 ctcaaatgaaatggcagtggacaa-tatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctg 562  Q
    |||||| |||||||||| |||||| |||||||||||||||||||||||||  | | ||| |||| ||  |||||||||| |||| ||||| ||||  | |    
T  15988944 ctcaaacgaaatggcagcggacaaatatgacagttttggagggggaggcagtaaccttactcgaggccctttactttgctgatgcgaacatatgggaccg 15988845  T
Q  563 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||||||| |||| | || |||||||| |||| ||  |||||||||| | |||||||||||||   || ||| || ||||||||||||||||||    
T  15988844 ggttgtcttcaagtccgtctcagctactctagtgcaatctctatcgtcttcaggccatggtgattcggaattctatgttattgtttctagtattat 15988749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 486 - 663
Target Start/End: Complemental strand, 41940908 - 41940732
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    |||||||||||||||||||||||| ||| ||| ||| || |||  ||| |||||||  ||| |||||| |||| | |||||||||||||||| |||| |     
T  41940908 aatatgacagttttggagggggagacaatagccttactcaatgtcattcactttgctcatgtgaacaactggacc-gggttgtcttcgagtccgactcaa 41940810  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattatctacc 663  Q
    |||||| |||| ||  ||||||||||| || |||| |||||| | || ||| ||||||||||||||||||||| ||||    
T  41940809 ctactctagtgcaaactctatcgtctctggaccattgtgattcagaattctatgctattgtttctagtattatttacc 41940732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 486 - 658
Target Start/End: Complemental strand, 26597629 - 26597457
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    ||||||||| |||||||||||||||||   || ||| ||||||| ||| ||||||||| || ||| | |||   | |||||||||||||||| |||| ||    
T  26597629 aatatgacaattttggagggggaggcagttgccttactcgatgccattcactttgcagttgggaatagatgagaccgggttgtcttcgagtccgactcag 26597530  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||| |||| |||  |||||||||||||||||||||||||   || | | || ||||||||||||||||||    
T  26597529 ctactctagtgcaagcgctatcgtctccgggccatggtgattcggaattttatgttattgtttctagtattat 26597457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 486 - 658
Target Start/End: Complemental strand, 27533078 - 27532906
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    ||||| |||||||||||||||||||||| ||||||||||||||  ||| ||||||| |||| ||| | ||||  | ||||||| |||||||| ||||| |    
T  27533078 aatataacagttttggagggggaggcaatagctttattcgatgtcattcactttgctgatgtgaatagatgggaccgggttgttttcgagtccgactttg 27532979  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    || ||  |||| |   | ||||||||||||| |||||||||| | || ||| |||||||||||| ||||||||    
T  27532978 cttctttagtgcagactttatcgtctccgggtcatggtgattcagaattctttgctattgtttcaagtattat 27532906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 486 - 657
Target Start/End: Original strand, 4268114 - 4268285
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    |||||||||||||||||||||||||||  ||| ||| | || ||  || ||||||| ||||  ||||  |||  | ||||| |||||||||| |||| |     
T  4268114 aatatgacagttttggagggggaggcagtagccttactagaggcccttcactttgctgatgctaacaggtgggaccgggttttcttcgagtccgactcat 4268213  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtatta 657  Q
    |||||| |||| ||| |||||| |||||||||||||||||||   || ||| ||||||||||||||||||||    
T  4268214 ctactctagtgcaagctctatcatctccgggccatggtgattcggaattctatgctattgtttctagtatta 4268285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 464 - 658
Target Start/End: Original strand, 12660308 - 12660503
Alignment:
Q  464 ctcaaatgaaatggcagtggacaa-tatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctg 562  Q
    |||||| |||||||||| || ||| ||||||||| || ||| ||||||||  ||  ||| ||||||  ||| |||||||  ||| |||||||||   | |    
T  12660308 ctcaaacgaaatggcagcgggcaaatatgacagtgttagagcgggaggcagtagtcttactcgatgtcattcactttgctaatgtgaacaaatgagaccg 12660407  T
Q  563 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
     ||| || |||||||||||| |||||||| |||| ||| |||||||||| ||||||| ||||||| | || ||| || ||||||||||||||||||    
T  12660408 tgttatcgtcgagtctgactcagctactctagtgcaagctctatcgtcttcgggccacggtgattcagaattctatgatattgtttctagtattat 12660503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 495 - 657
Target Start/End: Original strand, 27292458 - 27292620
Alignment:
Q  495 gttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttagctactcgag 594  Q
    |||||| |||||||||||| ||| ||| | |||||  || ||||||| ||||| |||| ||||  | |||||||||||||||  |||| | || ||| ||    
T  27292458 gttttgaagggggaggcaatagccttactagatgcccttcactttgctgatgataacagatgggaccgggttgtcttcgagttcgactcatctgctctag 27292557  T
Q  595 tgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtatta 657  Q
    || ||  |||||||||||| ||||||||||||||  || | | ||||||||||||||||||||    
T  27292558 tgcaaactctatcgtctccaggccatggtgatttggaattttatgctattgtttctagtatta 27292620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 486 - 623
Target Start/End: Complemental strand, 22767429 - 22767292
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    |||||||| ||||||||||||||||||  ||| ||| ||| ||||||| ||||||| ||||  |||| ||||  | ||||||||||||||| |||||  |    
T  22767429 aatatgactgttttggagggggaggcagtagccttactcgctgctattcactttgctgatgtaaacagatgggaccgggttgtcttcgagtttgactctg 22767330  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggt 623  Q
     ||||| |||| ||| |||||||||  |||| ||||||    
T  22767329 atactctagtgcaagctctatcgtcagcgggacatggt 22767292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 486 - 658
Target Start/End: Complemental strand, 34652426 - 34652254
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatgg-atctgggttgtcttcgagtctgactta 584  Q
    ||||||||||| ||| | ||||||  || | | ||| ||||||| ||| ||||||| |||| ||||| |||| ||| |||||||||||||| | ||||      
T  34652426 aatatgacagtgttgtaaggggagataataaccttactcgatgccattcactttgccgatgtgaacagatgggatc-gggttgtcttcgagcccgactcg 34652328  T
Q  585 gctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
     |||||| |||| ||| |||| |||||| |||||||||||||| | || | | || ||||||||||||||||||    
T  34652327 actactctagtgcaagctctaccgtctctgggccatggtgattcagaattatatgttattgtttctagtattat 34652254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 486 - 627
Target Start/End: Complemental strand, 11375685 - 11375544
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    |||||||||||||||||||||||| ||  ||| ||| |||| ||  || | ||||| ||||  || | ||||  | |||||||||| |||||||| | |     
T  11375685 aatatgacagttttggagggggagacagtagccttactcgaggcccttcattttgcggatgcaaatatatgggaccgggttgtctttgagtctgattcat 11375586  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatt 627  Q
    ||| || |||| ||| |||||||||||||| |||||||||||    
T  11375585 ctattctagtgcaagctctatcgtctccggtccatggtgatt 11375544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 562 - 658
Target Start/End: Original strand, 32632606 - 32632702
Alignment:
Q  562 gggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||||||| |||||||||| | |||||  |||||||| | ||||||||||| ||||| |||||| | || ||| ||  |||||||||| ||||||    
T  32632606 gggttgtctttgagtctgactcatctactttagtgtaagctttatcgtctccgagccatagtgattcagaattctatgacattgtttctaatattat 32632702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 8e-29; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 489 - 658
Target Start/End: Complemental strand, 15606163 - 15605994
Alignment:
Q  489 atgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttagcta 588  Q
    ||||||||||||||||||||||||  ||| ||| ||||||| ||| ||||||  |||| ||||||||||  | ||||||||||| |||| |||| |||||    
T  15606163 atgacagttttggagggggaggcagtagccttactcgatgccattcactttgttgatgggaacaaatgggaccgggttgtcttcaagtccgactcagcta 15606064  T
Q  589 ctcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    ||| |||| ||| |||||||||||  || |||||||||| | ||  || |||||||||||||||||||||    
T  15606063 ctctagtgcaagctctatcgtctctaggtcatggtgattcagaacactatgctattgtttctagtattat 15605994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 464 - 658
Target Start/End: Original strand, 28107131 - 28107326
Alignment:
Q  464 ctcaaatgaaatggcagtggaca-atatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatgg-atct 561  Q
    |||||| |||||||||| ||||| ||||||||||||||||||||||||||  ||| ||| | ||||| ||| |||||||| ||  ||| | |||| |||     
T  28107131 ctcaaacgaaatggcagcggacagatatgacagttttggagggggaggcagtagccttacttgatgccattcactttgcaaatatgaatagatgggatca 28107230  T
Q  562 gggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
     | |||||||||||||| |||  ||||||| |||| ||| |||||||||||||||||||||||||| | || ||| || ||||||||||||||||||    
T  28107231 cg-ttgtcttcgagtctaactccgctactctagtgcaagctctatcgtctccgggccatggtgattcagaattctatgttattgtttctagtattat 28107326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 486 - 658
Target Start/End: Complemental strand, 30802163 - 30801991
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    |||||||||||||||| ||||||||||  ||| ||| | ||||| |||||||||||||||| ||| ||||||  || ||||||||||||||| || | ||    
T  30802163 aatatgacagttttggtgggggaggcagtagccttactagatgccatttactttgcagatgtgaaaaaatgggactaggttgtcttcgagtccgattcag 30802064  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||  |||| ||| |||||||| |||| |||||||||| ||  || ||| || ||||||||||||||||||    
T  30802063 ctactttagtgcaagctctatcgtttccgagccatggtgacttggaattctatgttattgtttctagtattat 30801991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 486 - 658
Target Start/End: Complemental strand, 19691051 - 19690879
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    |||||||| |||||||| |||||||||| ||| ||||||||||  ||| ||||||| |||| ||||| |||   | | ||||||||||||||||||| ||    
T  19691051 aatatgaccgttttggaaggggaggcaatagccttattcgatgtcattcactttgctgatgtgaacagatgtgaccgagttgtcttcgagtctgactcag 19690952  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||  |||| ||| ||||||||||| | | |||||||||||  || ||| ||  |||||||||||||||||    
T  19690951 ctactttagtgcaagctctatcgtctctgagtcatggtgatttggaattctatgtcattgtttctagtattat 19690879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 464 - 658
Target Start/End: Original strand, 14680154 - 14680349
Alignment:
Q  464 ctcaaatgaaatggcagtgg-acaatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctg 562  Q
    ||||||||||||||||| || | ||||||||||| |||||||||||||||  ||| ||| |||| ||  || ||| ||| ||||  |||| ||||| | |    
T  14680154 ctcaaatgaaatggcagcgggaaaatatgacagtattggagggggaggcagtagccttactcgaggcccttcactctgctgatgcaaacagatggaaccg 14680253  T
Q  563 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
     |||||||| || || ||||   |||||| | || ||| |||||| |||||||||  |||||||| |||| ||| |||||||||||||||||||||    
T  14680254 agttgtctttgattccgactcgtctactctattgcaagctctatcatctccgggcagtggtgattcaaaattctctgctattgtttctagtattat 14680349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 486 - 627
Target Start/End: Complemental strand, 15053347 - 15053206
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    ||||||| ||| |||||||||||||||  ||| ||| ||||||| |||  | |||| || | ||| |||||   |  ||||||||||||||| |||| ||    
T  15053347 aatatgatagtgttggagggggaggcagtagccttactcgatgccattcgccttgctgacgtgaaaaaatgagacaaggttgtcttcgagtccgactcag 15053248  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatt 627  Q
    |||||| |||| ||   ||||||||| |||||||||||||||    
T  15053247 ctactctagtgcaaacgctatcgtcttcgggccatggtgatt 15053206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 464 - 513
Target Start/End: Complemental strand, 29368251 - 29368201
Alignment:
Q  464 ctcaaatgaaatggcagtggacaa-tatgacagttttggagggggaggcaa 513  Q
    |||||| |||||||||| ||| || ||||||||||||||||||||||||||    
T  29368251 ctcaaaagaaatggcagcggataaatatgacagttttggagggggaggcaa 29368201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 658
Target Start/End: Complemental strand, 34104539 - 34104465
Alignment:
Q  584 agctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||||| |||| |||  ||||||||||||| ||||||||||| | || | | ||||||||||| |||||||||    
T  34104539 agctactctagtgcaagcgctatcgtctccggaccatggtgattcagaattttatgctattgtttttagtattat 34104465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 486 - 658
Target Start/End: Original strand, 7127238 - 7127410
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    ||||||| ||||||||||||||||| |  ||| ||| ||||||||||| ||||||| |||| ||||| ||||  | |||||| ||||||||||||||  |    
T  7127238 aatatgaaagttttggagggggaggtagtagccttactcgatgctattcactttgctgatgtgaacagatgggaccgggttgccttcgagtctgactatg 7127337  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||  |||| ||| ||| ||||||||||||||||||||||||  | ||| || ||||||||| ||||||||    
T  7127338 ctactttagtgcaagctctttcgtctccgggccatggtgatttagtattctatgttattgtttcaagtattat 7127410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 486 - 658
Target Start/End: Complemental strand, 185762 - 185591
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    ||||||||||||||||||||| ||| |  ||| ||| ||||| ||||| ||||||  |||| ||| | ||||| | ||||||||| |||||||||||  |    
T  185762 aatatgacagttttggagggg-aggaagtagccttactcgatactattcactttgttgatgtgaatagatggaaccgggttgtctacgagtctgactctg 185664  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||  |||| ||| ||| |||||||||| ||||||||||| | || ||| |||||||||||||||||||||    
T  185663 ctactttagtgcaagctctttcgtctccggaccatggtgattcagaattctatgctattgtttctagtattat 185591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 486 - 657
Target Start/End: Original strand, 23853947 - 23854118
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    |||||||||||||||||||| ||||||  ||| ||| | || || ||| ||||||  ||||  |||| |||   ||| |||||||||||||| |||| |     
T  23853947 aatatgacagttttggagggtgaggcagtagccttacttgaggccattcactttgttgatgctaacagatgagactgagttgtcttcgagtccgactcat 23854046  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtatta 657  Q
    | |||| |||| ||| |||||||||||||||||||||||||| | || ||| ||||||||||||||||||||    
T  23854047 caactctagtgcaagctctatcgtctccgggccatggtgattcagaattctatgctattgtttctagtatta 23854118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 486 - 627
Target Start/End: Complemental strand, 478228 - 478087
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    |||||||||||||||||||||||||||  ||| ||| ||||||| ||| |||||||  ||| ||| | ||||  | ||||| ||||||| |||||||       
T  478228 aatatgacagttttggagggggaggcagtagccttactcgatgccattcactttgctaatgtgaatagatgggaccgggttatcttcgaatctgactcta 478129  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatt 627  Q
    |||||| |||| ||| |||||||||||||||  |||||||||    
T  478128 ctactctagtgcaagctctatcgtctccgggttatggtgatt 478087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 486 - 627
Target Start/End: Complemental strand, 8451295 - 8451154
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    ||||||||||| |||||||||||||||  ||||||| ||||| | ||| |||| || |||| ||||  ||||  | ||||||||||||||||||||| |     
T  8451295 aatatgacagtgttggagggggaggcagtagctttactcgattccattcacttcgctgatgtgaacggatgggaccgggttgtcttcgagtctgactcat 8451196  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatt 627  Q
    |||||  |||| ||| | |||||||||| || ||||||||||    
T  8451195 ctactttagtgcaagctttatcgtctccaggtcatggtgatt 8451154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 562 - 658
Target Start/End: Complemental strand, 598333 - 598237
Alignment:
Q  562 gggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    ||||||||||| |||| ||||||||||||| |||| ||| |||||||||| | || ||||||||||  ||  ||| |||||||||||||||||||||    
T  598333 gggttgtcttcaagtcggacttagctactctagtgcaagctctatcgtcttcaggtcatggtgattcgaagttctatgctattgtttctagtattat 598237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 464 - 658
Target Start/End: Original strand, 13415015 - 13415210
Alignment:
Q  464 ctcaaatgaaatggcagtggacaa-tatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaat-ggatct 561  Q
    |||||| |||||||||| |||||| |||||||||||||||||||||||||  ||| ||| |||| ||  ||   ||||| ||||  |||| || |||||     
T  13415015 ctcaaacgaaatggcagcggacaaatatgacagttttggagggggaggcagtagccttactcgaggcccttccttttgcggatgcaaacagatgggatc- 13415113  T
Q  562 gggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    | |||||||| ||||| || |   |||||| |||| ||||| ||||||| ||||||||||||||||   || | | ||||||||||| |||||||||    
T  13415114 gagttgtctttgagtccgattcttctactctagtgcaaggtatatcgtccccgggccatggtgattctgaattttatgctattgtttttagtattat 13415210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 562 - 658
Target Start/End: Complemental strand, 40588826 - 40588730
Alignment:
Q  562 gggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||||||| |||||||| | | |||||| |||||||  ||||||||| |||||||||| |||||   || ||| ||||||||||| |||||||||    
T  40588826 gggttgtctttgagtctgattcatctactctagtgtaaactctatcgtccccgggccatgatgattctgaattctatgctattgtttatagtattat 40588730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 658
Target Start/End: Original strand, 11870364 - 11870451
Alignment:
Q  571 tcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||||||||| ||||||||  ||| ||| ||||| ||||| | ||||||||||||   |  ||| |||||||||||||||||||||    
T  11870364 tcgagtctgactcagctactcttgtgcaagctctattgtctcggagccatggtgattcggatttctatgctattgtttctagtattat 11870451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 563 - 658
Target Start/End: Complemental strand, 33642859 - 33642764
Alignment:
Q  563 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||||||| ||||  ||| | |||||| | || ||| ||| |||||||||||||||||||||| | || ||  || ||||||||||||||||||    
T  33642859 ggttgtcttcaagtccaactcatctactctaatgcaagctctgtcgtctccgggccatggtgattcagaattcaatgatattgtttctagtattat 33642764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 602 - 658
Target Start/End: Complemental strand, 3606795 - 3606739
Alignment:
Q  602 tctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    ||||||||||| ||| |||||||| ||  || ||| |||||||||||||||||||||    
T  3606795 tctatcgtctcagggtcatggtgacttggaattctatgctattgtttctagtattat 3606739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 480 - 512
Target Start/End: Original strand, 9496791 - 9496823
Alignment:
Q  480 gtggacaatatgacagttttggagggggaggca 512  Q
    |||||||||||||||||||||||||| ||||||    
T  9496791 gtggacaatatgacagttttggagggtgaggca 9496823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 7e-26; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 486 - 658
Target Start/End: Original strand, 25682666 - 25682838
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    ||||||||||| |||||||||||||||  ||| ||| ||||||  ||| |||||||  ||| ||||| ||||  | ||| ||||||||||| ||||| ||    
T  25682666 aatatgacagtgttggagggggaggcagtagccttactcgatgtcattcactttgctaatgtgaacagatgggaccgggctgtcttcgagtttgactcag 25682765  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||| |||  ||| ||||||||||||||||||  |||||||| || ||| | |||||||||||||||||||    
T  25682766 ctactctagtacaagctctatcgtctccgggccacagtgatttagaattctatactattgtttctagtattat 25682838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 472 - 657
Target Start/End: Original strand, 44527253 - 44527439
Alignment:
Q  472 aaatggcagtggacaa-tatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtct 570  Q
    ||||||||| |||||| |||||||||||||||||||||||||  ||| ||| | || ||  || ||||||| ||||  |||| ||||  | |||||||||    
T  44527253 aaatggcagcggacaaatatgacagttttggagggggaggcagtagccttactagaggcccttcactttgctgatgctaacagatgggaccgggttgtct 44527352  T
Q  571 tcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtatta 657  Q
    ||||||| |||| | ||||||  ||| ||| |||||| |||||||||||||||||||   || ||| ||||||||||||||||||||    
T  44527353 tcgagtccgactcatctactcttgtgcaagctctatcatctccgggccatggtgattcggaattctatgctattgtttctagtatta 44527439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 486 - 658
Target Start/End: Original strand, 36733711 - 36733883
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    |||||| ||||||||||||||||||||  ||  ||| || ||| |||| ||||||| |||| ||||||||||  | |||||||||||||||||||||       
T  36733711 aatatggcagttttggagggggaggcagtagtcttactcaatgttattcactttgctgatgtgaacaaatgggaccgggttgtcttcgagtctgactcta 36733810  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
      |||| |||| ||| | |||||||||||||||||| ||||| | || ||| || ||||||||||||||||||    
T  36733811 taactctagtgcaagctatatcgtctccgggccatgatgattcataattctatgttattgtttctagtattat 36733883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 486 - 658
Target Start/End: Original strand, 44602767 - 44602939
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    ||||||||| |||||||||||||| ||  ||  ||| ||||||  ||| ||||| | |||| ||||| |||   | |||||| |||||||||| |||  |    
T  44602767 aatatgacaattttggagggggagacattagtcttactcgatgtcattcactttactgatgtgaacagatgagaccgggttgccttcgagtctaactccg 44602866  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||| |||| ||| |||||| ||||||||||||||||||| |||| ||| |||||||||||||||||||||    
T  44602867 ctactctagtgcaagctctatcatctccgggccatggtgattcaaaattctatgctattgtttctagtattat 44602939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 486 - 658
Target Start/End: Complemental strand, 48949896 - 48949724
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    ||||||| |||||||||||||||||||   || ||| ||||||| ||| ||||||  | || ||||| ||||  | |||||||||||||||   ||| ||    
T  48949896 aatatgaaagttttggagggggaggcagttgccttactcgatgcgattcactttgttgttgggaacagatgggaccgggttgtcttcgagttcaactcag 48949797  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||| |||| |||  |||||||||||||||||||||||||   || | | |||||||||||||||||||||    
T  48949796 ctactctagtgcaagcgctatcgtctccgggccatggtgattcggaattttatgctattgtttctagtattat 48949724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 486 - 658
Target Start/End: Original strand, 51113330 - 51113502
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    ||||| || ||||||||||||||||||   || ||| ||||||  ||| ||||||  | || ||||| ||||  | |||||||||||||||| |||| ||    
T  51113330 aatataaccgttttggagggggaggcagttgccttactcgatgtcattcactttgttgttgggaacagatgggaccgggttgtcttcgagtccgactcag 51113429  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||| |||| |||  |||||||||| ||||||||||||||   |  | | |||||||||||||||||||||    
T  51113430 ctactctagtgcaagcgctatcgtctctgggccatggtgattcggagttttatgctattgtttctagtattat 51113502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 562 - 658
Target Start/End: Original strand, 2885314 - 2885410
Alignment:
Q  562 gggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||||||||||||| |||| |||||||| |||| ||| |||||||||| ||||| |||||||||   |  | | |||||||||||||||||||||    
T  2885314 gggttgtcttcgagtcagactcagctactctagtgcaagctctatcgtcttcgggctatggtgattcggagttatatgctattgtttctagtattat 2885410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 562 - 658
Target Start/End: Original strand, 5609430 - 5609526
Alignment:
Q  562 gggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||||||||||||  |||| | |||||| |||| ||  ||||||||||| ||| |||||||||| | || ||| |||||||||||||||||||||    
T  5609430 gggttgtcttcgagttcgactcatctactctagtgcaaactctatcgtctcagggtcatggtgattcagaattctatgctattgtttctagtattat 5609526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 464 - 591
Target Start/End: Original strand, 48166229 - 48166357
Alignment:
Q  464 ctcaaatgaaatggcagtggacaa-tatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaat-ggatct 561  Q
    ||||||||||||||||| |  ||| |||||||||||||||| ||||| ||| ||| ||| ||||||  ||| |||||||  ||| ||| | || |||||     
T  48166229 ctcaaatgaaatggcagcgagcaaatatgacagttttggagtgggagacaatagccttactcgatgtcattcactttgcttatgtgaatatatgggatc- 48166327  T
Q  562 gggttgtcttcgagtctgacttagctactc 591  Q
    ||||||||||||||||||| | ||||||||    
T  48166328 gggttgtcttcgagtctgattcagctactc 48166357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 657
Target Start/End: Original strand, 52109543 - 52109639
Alignment:
Q  561 tgggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtatta 657  Q
    ||||||||||| |||| ||| | | |||||| |||  ||| ||||| |||||||| |||||||||||   || ||| || |||||||||||||||||    
T  52109543 tgggttgtctttgagtgtgattcatctactctagtacaagctctattgtctccggaccatggtgattcggaattctatgttattgtttctagtatta 52109639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 7e-23; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 464 - 658
Target Start/End: Original strand, 88551 - 88746
Alignment:
Q  464 ctcaaatgaaatggcagtggacaa-tatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctg 562  Q
    |||||||||||||||| ||| ||| |||||||||||||||||||||||||  ||| ||| |||| ||  || ||||||  ||||  |||| ||||  | |    
T  88551 ctcaaatgaaatggcaatgggcaaatatgacagttttggagggggaggcagtagccttactcgaggcccttcactttgttgatgctaacagatgggaccg 88650  T
Q  563 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    ||||||||||||||| |||| | |||||| |||| ||| |||||||||||  |  |||||||||| | || ||| |||||||||||| ||||||||    
T  88651 ggttgtcttcgagtccgactcatctactctagtgcaagctctatcgtctcaagatcatggtgattcagaattctatgctattgtttccagtattat 88746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 486 - 655
Target Start/End: Complemental strand, 34696076 - 34695907
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    |||||||||||||||||||||||||||  ||| ||| || | || ||| ||||||| ||||  || | ||||    |||||||||||||||| ||||  |    
T  34696076 aatatgacagttttggagggggaggcagtagccttactcaaggccattcactttgctgatgtcaatagatgggaacgggttgtcttcgagtccgactccg 34695977  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtat 655  Q
    |||||| |||| |||   ||||||||||||| |||||||||| | || | | ||||||||||||||||||    
T  34695976 ctactctagtgcaagcgttatcgtctccgggtcatggtgattcagaattttatgctattgtttctagtat 34695907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 486 - 655
Target Start/End: Complemental strand, 34718488 - 34718319
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    |||||||||||||||||||||||||||  ||| ||| || | || ||| ||||||| ||||  || | ||||    |||||||||||||||| ||||  |    
T  34718488 aatatgacagttttggagggggaggcagtagccttactcaaggccattcactttgctgatgtcaatagatgggaacgggttgtcttcgagtccgactccg 34718389  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtat 655  Q
    |||||| |||| |||   ||||||||||||| |||||||||| | || | | ||||||||||||||||||    
T  34718388 ctactctagtgcaagcgttatcgtctccgggtcatggtgattcagaattttatgctattgtttctagtat 34718319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 567 - 663
Target Start/End: Original strand, 26198778 - 26198874
Alignment:
Q  567 gtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattatctacc 663  Q
    ||||||||||| |||| |||||||| |||| ||| |||||||||||  || |||||||| || ||| ||| ||||||||||||||||||||| ||||    
T  26198778 gtcttcgagtccgactcagctactctagtgcaagctctatcgtctctaggtcatggtgaattgaaattctatgctattgtttctagtattatttacc 26198874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 560 - 658
Target Start/End: Complemental strand, 1418079 - 1417981
Alignment:
Q  560 ctgggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    ||||||||||||||||||||||| | |||||| |||  ||| ||||| ||||| || | ||||||||| | || ||| |||||||||||||||||||||    
T  1418079 ctgggttgtcttcgagtctgactcatctactctagttcaagctctattgtctctggactatggtgattcagaattctatgctattgtttctagtattat 1417981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 535 - 660
Target Start/End: Original strand, 22845600 - 22845725
Alignment:
Q  535 actttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaat 634  Q
    ||||||| |||| ||||| ||||  | ||||||||||||||||  ||| | |||||| |||| ||| |||||||||||| |  |||||||||| | || |    
T  22845600 actttgctgatgcgaacagatgggaccgggttgtcttcgagtccaactaatctactctagtgcaagctctatcgtctccagatcatggtgattcagaatt 22845699  T
Q  635 ctgtgctattgtttctagtattatct 660  Q
    ||  ||||||||||||||||||||||    
T  22845700 ctaggctattgtttctagtattatct 22845725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 562 - 658
Target Start/End: Original strand, 9710046 - 9710142
Alignment:
Q  562 gggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||||||||||||||||||| | ||||| |||| ||| |||||||||  |||| |||||| ||| | || ||| ||| |||||||||||||||||    
T  9710046 gggttgtcttcgagtctgactttgatactctagtgcaagctctatcgtcagcgggacatggtaattcataattctatgcaattgtttctagtattat 9710142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 486 - 658
Target Start/End: Complemental strand, 12130810 - 12130638
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    ||||||| ||| |||||||||||||||  ||| ||| | || ||| || ||||||| ||||  || | |||||   ||||| ||||||||||||||| |     
T  12130810 aatatgatagtgttggagggggaggcagtagccttacttgaggctcttcactttgctgatgcaaatagatggaatcgggttatcttcgagtctgactcat 12130711  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||| |||  ||| |||||| ||| |||| |||||||||| | || ||| ||||||| |||||||||||||    
T  12130710 ctactctagtccaagctctatcatcttcgggacatggtgattcagaattctatgctattatttctagtattat 12130638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 563 - 658
Target Start/End: Complemental strand, 13109964 - 13109869
Alignment:
Q  563 ggttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    ||||||||||||||| ||||   |||||| |||| ||| |||||||||| ||||||||||||||||  || | |  ||||||||||| ||||||||    
T  13109964 ggttgtcttcgagtccgactcttctactctagtggaagctctatcgtcttcgggccatggtgatttggaattataagctattgtttccagtattat 13109869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 564 - 658
Target Start/End: Original strand, 14827173 - 14827267
Alignment:
Q  564 gttgtcttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||||| || |||||||||||||||| |||| ||| |||||||| |  ||| ||||||||||  ||| ||| ||||||| ||| || ||||||    
T  14827173 gttgtctttgaatctgacttagctactctagtgcaagctctatcgtgtttgggtcatggtgattcgaaattctatgctattatttataatattat 14827267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 486 - 627
Target Start/End: Original strand, 201 - 342
Alignment:
Q  486 aatatgacagttttggagggggaggcaacagctttattcgatgctatttactttgcagatgagaacaaatggatctgggttgtcttcgagtctgacttag 585  Q
    ||||||||||||| |||||||||||||   || ||| ||||||| ||| ||||||| | || ||| | ||||  | |||||||||||||||| |||| ||    
T  201 aatatgacagtttgggagggggaggcagttgccttactcgatgccattcactttgctgttgggaatatatgggaccgggttgtcttcgagtccgactcag 300  T
Q  586 ctactcgagtgtaaggtctatcgtctccgggccatggtgatt 627  Q
    |||||| |||| |||  ||||| ||||| | |||||||||||    
T  301 ctactctagtgcaagcgctatcatctccagaccatggtgatt 342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 570 - 658
Target Start/End: Complemental strand, 352 - 264
Alignment:
Q  570 ttcgagtctgacttagctactcgagtgtaaggtctatcgtctccgggccatggtgatttaaaaatctgtgctattgtttctagtattat 658  Q
    |||||||| |||| | |||||| |||| ||| |||||| ||||| || |||||| ||| | || ||| |||||||||||||||||||||    
T  352 ttcgagtccgactcatctactctagtgcaagctctatcatctccaggtcatggtaattcagaattctatgctattgtttctagtattat 264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University