View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3635_low_12 (Length: 286)
Name: NF3635_low_12
Description: NF3635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3635_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 278
Target Start/End: Original strand, 2166150 - 2166400
Alignment:
| Q |
20 |
gatttgtgcaacaatgtagaaggtgtcgggaagaggaaataatggagacaaaggtaacgacggaagagtattcattggctttgttcaatgatgattatgg |
119 |
Q |
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| T |
2166150 |
gatttgtgcaacaatgtagaaggtgtcgggaagaggaaataatggagacaaaggtaacgacggaagagtattcattggctttgttcaatgatgattatgg |
2166249 |
T |
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| Q |
120 |
acgagagcataagcaaaagcaagtgtgctgcaatttgaaacgctttttgagacagtgggtgaagaaatacacatggcctttctttgccttttcttcattg |
219 |
Q |
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| T |
2166250 |
acgagagcataagcaa------gtgtgctgcaatttgaaacgctttttgagacagtgg-tgaagaaatacacatggcctttctttgcctttg-ttcattg |
2166341 |
T |
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| Q |
220 |
aatttggatcaacaagtggccaacttgtacacgaccaactaggagcagtacagtataat |
278 |
Q |
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| T |
2166342 |
aatttggatcaacaagtggccaacttgtacacgaccaactaggatcagtacagtataat |
2166400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 2152784 - 2152890
Alignment:
| Q |
20 |
gatttgtgcaacaatgtagaaggtgtcgggaagaggaaataatggagacaaaggtaacgacggaagagtattcattggctttgttcaatgatgattatgg |
119 |
Q |
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| T |
2152784 |
gatttgtgcaacaatgtagaaggtgtcggaaagaggaaattatggatacaaaggtaatgatggaagagtatcctttggcttcattcagtgatgattatgg |
2152883 |
T |
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| Q |
120 |
acgagag |
126 |
Q |
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| T |
2152884 |
acgagag |
2152890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 227
Target Start/End: Original strand, 2154170 - 2154263
Alignment:
| Q |
136 |
aagcaagtgtgctgcaatttgaaacgctttttgagacagtgggtgaagaaa----tacacatggcctttctttgccttttcttcattgaatttgga |
227 |
Q |
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||||||||||||||||||||||||||||||| |||||||| ||| | |||| |||||| || ||||||||||| ||| ||||||||||||||| |
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| T |
2154170 |
aagcaagtgtgctgcaatttgaaacgcttttcgagacagt-ggtaacgaaatacgtacacaaggtctttctttgcc-tttgttcattgaatttgga |
2154263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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