View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3635_low_13 (Length: 242)
Name: NF3635_low_13
Description: NF3635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3635_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 22 - 231
Target Start/End: Original strand, 1352850 - 1353059
Alignment:
| Q |
22 |
tgagatgactgggtatagagaatatgcgtgtgaggatcattagccgagagaacatatttaaccgtaagctgaatgtcatgaatatctatataagggacaa |
121 |
Q |
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| T |
1352850 |
tgagatgactgggtatagagaatatgcgtgtgaggatcattagccgagagaacatatttaaccgtaagctgaatgtcatgaatatctatataaggaacaa |
1352949 |
T |
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| Q |
122 |
gagacccaagaattccaagagttgtccattgactaaaccagaaggatgaagacccagactcagcacgccagacatatcatgctttaagaacatttttagc |
221 |
Q |
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| T |
1352950 |
gagacccaagaattccaagagttgtccattgactaaaccaaaaggatgaagacccagactcagcacgccagacatatcatgctttaagaacatttttagc |
1353049 |
T |
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| Q |
222 |
tttgatgatg |
231 |
Q |
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|||||||||| |
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| T |
1353050 |
tttgatgatg |
1353059 |
T |
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Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 35 - 175
Target Start/End: Original strand, 25122121 - 25122262
Alignment:
| Q |
35 |
tatagagaatatgcgtgtgaggatcattagccgagagaacatatttaaccgtaagctgaatgtcatgaatatctata--taagggacaagagacccaaga |
132 |
Q |
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| T |
25122121 |
tatagagaatacgcgtgtgaggatcattagtcgatagaacatctttgaccgtaagct-aatgtcatgaatatctatatataagggacaagggacccaaga |
25122219 |
T |
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| Q |
133 |
attccaagagttgtccattgactaaaccagaaggatgaagacc |
175 |
Q |
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| T |
25122220 |
atgccaagagtcgtccattggctaaaccagaaggatgaagacc |
25122262 |
T |
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Back To:
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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 33 - 129
Target Start/End: Complemental strand, 9535831 - 9535735
Alignment:
| Q |
33 |
ggtatagagaatatgcgtgtgaggatcattagccgagagaacatatttaaccgtaagctgaatgtcatgaatatctatataagggacaagagaccca |
129 |
Q |
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| T |
9535831 |
ggtatagagaatatttgtctgcggatcatttgcagagagaacatctttaacagtgagctgcaagtcatggatatcaatataagggacaagagaccca |
9535735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 133
Target Start/End: Complemental strand, 21376776 - 21376683
Alignment:
| Q |
40 |
agaatatgcgtgtgaggatcattagccgagagaacatatttaaccgtaagctgaatgtcatgaatatctatataagggacaagagacccaagaa |
133 |
Q |
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| T |
21376776 |
agaatattcgtgtggggatcattagaagtgagcacatcttttacggttagatgcaagtcatgtatgtcaatataagggacaagagacccaagaa |
21376683 |
T |
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