View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3635_low_15 (Length: 238)
Name: NF3635_low_15
Description: NF3635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3635_low_15 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 56235851 - 56236071
Alignment:
| Q |
17 |
attttatttgtagttttcatggtggatgtgttctggttatcgtcaagaactttatttgcaattttagttaagtattttgctatatatctctagaaaaaag |
116 |
Q |
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| T |
56235851 |
attttatttgtagttttcatggtggatgtgttctggttatcgtcaagaactttatttgcaattttagttaactattttgctatatatctctagaaaaaag |
56235950 |
T |
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| Q |
117 |
aacgaagaaattttgtgagaattctgtgaatgaaggtaacacattgctggatttatacttgctgtttgaaggaatgaaggtggaagttcaacctttgcta |
216 |
Q |
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| T |
56235951 |
aacgaagaaattttgtgagaattatgtgaatgaaggtaacactttgctggatttatacttgctgtttgaaggaatgaaggtggaagttcaa-ctttgcta |
56236049 |
T |
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| Q |
217 |
gttgtttgttgccattgaccct |
238 |
Q |
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| T |
56236050 |
gttgtttgttgccattgaccct |
56236071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 30517700 - 30517910
Alignment:
| Q |
17 |
attttatttgtagttttcatggtggatgtgttctggttatcgtcaagaactttatttgcaattttagttaagtattttgctatatatctctagaaaaaag |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30517700 |
attttatttgtagttttcatggtggatgtgttctggttatcatcaagaactttatttgcaattttagttaactattttgctatatatctctagaaaaaag |
30517799 |
T |
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| Q |
117 |
aacgaagaaattttgtgagaattctgtgaatgaaggtaacacattgctggatttatacttgctgtttgaaggaatgaaggtggaagttcaacctttgcta |
216 |
Q |
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| T |
30517800 |
aacgaagaaattt-----------tgtgaatgaaggtaacactttgctggatttatccttgctgtttgaaggaatgaaggtggaagttcaacctttgcta |
30517888 |
T |
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| Q |
217 |
gttgtttgttgccattgaccct |
238 |
Q |
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| T |
30517889 |
gttgtttgttgccattgaccct |
30517910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 8003236 - 8003194
Alignment:
| Q |
179 |
tgtttgaaggaatgaaggtggaagttcaacctttgctagttgt |
221 |
Q |
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| T |
8003236 |
tgttggaaggaatgaaggtggaagttcaacctttgctagttgt |
8003194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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