View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3635_low_3 (Length: 470)
Name: NF3635_low_3
Description: NF3635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3635_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 8e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 67 - 348
Target Start/End: Complemental strand, 10227924 - 10227648
Alignment:
| Q |
67 |
ctcgaataagagtctttcattggaggtagatggacattgactatgtcattcaatatgaagaaggatgaaccagcaggtattattgaaaccagcagtgaga |
166 |
Q |
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| T |
10227924 |
ctcgaataagagtctttgatttgaggtagatggacattgactatgtcattcaatatgaag---gatgaaccagcaggtattattgaaccatgtat--act |
10227830 |
T |
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| Q |
167 |
gagatctaattgtatctttgtctttataaacattacggagagattgttagatctcttacacttttcataaagatcaactacatctagagtgttggttttt |
266 |
Q |
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| T |
10227829 |
attaccaacatatatttttgtctttataaacatcacggagagattgttagatctctttcacttttcataaagatcaactacatctagagtgttggttttt |
10227730 |
T |
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| Q |
267 |
agtaatacatgttattacatcccttcctaatggcatagtcaatgtccatccagctcagatgaaaaagaactctcatgcttca |
348 |
Q |
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| T |
10227729 |
agtaatacatgttattacatcccttcctaatggcatagtcaatgtccatccagctcggatgaaaaagaactctcatgcttca |
10227648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 384 - 450
Target Start/End: Complemental strand, 10227649 - 10227582
Alignment:
| Q |
384 |
caccagacctgacatgacatatgttgttggagtttgagg-aagatatcagagtaatccaagtgttgac |
450 |
Q |
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| T |
10227649 |
caccagacctgacatgacatatgttgttggagttcgaggaaagatatcagagtaatccaagtgttgac |
10227582 |
T |
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