View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3635_low_5 (Length: 430)
Name: NF3635_low_5
Description: NF3635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3635_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 38816651 - 38816261
Alignment:
| Q |
1 |
tagttatattcgtgaatcgtgatagtgttggagactgacatctgttggacactggacacacctttaatatgaagtctcggtgctagatatttatgggaga |
100 |
Q |
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| T |
38816651 |
tagttatattcgtgaatcgtgatagtgttggagactgacatctgttggacactgcacacacctttaatatgaagtctcggtgctagatatttatgggaga |
38816552 |
T |
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| Q |
101 |
tatttatttgtgaagtttctttctaaggctttcttgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaaga |
200 |
Q |
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| T |
38816551 |
tatttatttgtgaagtttctttctaaggctttcttgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaaga |
38816452 |
T |
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| Q |
201 |
tgaaggaggaatgcttgggtgggtgagaaagggacaaatggtatgctgttgtttaggtttaattaaaccttgttcttagggttttacattttgtctagat |
300 |
Q |
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| T |
38816451 |
tgaaggaggaatgcttgggtgggtgagaaagggacaaatggtatgctgttgtttaggtttaattaaaccttgttcttagggttttacattttgtctagat |
38816352 |
T |
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| Q |
301 |
tttgcagttggctactttttgtggttacagttggtatacatcacggccttatgtaaattaaactgactttgtctgttagagaagggtatat |
391 |
Q |
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| T |
38816351 |
tttgcagttggctactttttgtggttacagttggtatacatcacggccttatgtaaattaaactgactttgtctgttagagaagggtatat |
38816261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 135 - 284
Target Start/End: Complemental strand, 38821928 - 38821782
Alignment:
| Q |
135 |
tgttgtgtgttcaggtgaagatttgagtgatcttgctgtggaacattcaatttgcccttctaaagatgaaggaggaatgcttgggtgggtgagaaaggga |
234 |
Q |
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| T |
38821928 |
tgttgtgtgtccaggtgaagatttgagcgatcttgctgtggactattcggtgtgcccatctaaagaagaaggaggaaggcttgggtgggtgagaaaggga |
38821829 |
T |
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| Q |
235 |
caaatggtatgctgttgtttaggtttaattaaaccttgttcttagggttt |
284 |
Q |
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| T |
38821828 |
caaatggta---tgatgtttagatttgcttaaatcttgttcttagggttt |
38821782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 385 - 430
Target Start/End: Original strand, 38816202 - 38816247
Alignment:
| Q |
385 |
ggtatattgtatcctttgaacctcaatttctcacctacccaaagaa |
430 |
Q |
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| T |
38816202 |
ggtatattgtatcctttgaacctcaatttctcacctacccaaagaa |
38816247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 35665597 - 35665559
Alignment:
| Q |
26 |
tgttggagactgacatctgttggacactggacacacctt |
64 |
Q |
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| T |
35665597 |
tgttggaaactgacatgtgttggacactggacacacctt |
35665559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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