View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3635_low_9 (Length: 322)

Name: NF3635_low_9
Description: NF3635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3635_low_9
NF3635_low_9
[»] chr6 (1 HSPs)
chr6 (10-304)||(34349968-34350263)


Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 10 - 304
Target Start/End: Original strand, 34349968 - 34350263
Alignment:
Q  10 ataatactcctagaacaatcctttattaggcaannnnnnnn-cttcctaatcttttgagaagtgaatgagttccttatgtacagaatgggaaattctccc 108  Q
    |||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34349968 ataatactcctagaacaatcctttattaggcaatttttttttcttcctaatcttttgagaagtgaatgagttccttatgtacggaatgggaaattctccc 34350067  T
Q  109 atgtgagagaaccatatactatatagagctttgtgaaattcgaagtgctttataaattgttcactaaattgattcttaagtctatatatggatggattct 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  34350068 atgtgagagaaccatatactatatagagctttgtgaaattcgaagtgctttataaattgttcactaaattgattcttaagtctgtatatgaatggattct 34350167  T
Q  209 cttgtcggggtttcaagtttgtctgaatttcttgttcttgatttctcttttaagataagaaaagcataagaataaagaaaaacatacccacatact 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34350168 cttgtcggggtttcaagtttgtctgaatttcttgttcttgatttctcttttaagataagaaaagcataagaataaagaaaaacatacccacatact 34350263  T

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