View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3636_high_1 (Length: 1073)

Name: NF3636_high_1
Description: NF3636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3636_high_1
NF3636_high_1
[»] chr5 (11 HSPs)
chr5 (353-1058)||(23737954-23738662)
chr5 (353-1058)||(19208454-19209159)
chr5 (678-1058)||(43300246-43300624)
chr5 (678-1058)||(41958262-41958645)
chr5 (735-926)||(28450488-28450679)
chr5 (355-697)||(28451194-28451533)
chr5 (740-813)||(28450713-28450786)
chr5 (207-324)||(42294572-42294696)
chr5 (222-321)||(42300721-42300820)
chr5 (232-321)||(42294206-42294294)
chr5 (699-737)||(28451131-28451169)
[»] chr8 (5 HSPs)
chr8 (655-1058)||(43916173-43916575)
chr8 (982-1016)||(11472225-11472259)
chr8 (996-1030)||(1668205-1668239)
chr8 (996-1030)||(16658920-16658954)
chr8 (996-1030)||(38521211-38521245)
[»] chr7 (1 HSPs)
chr7 (678-1058)||(44660381-44660759)
[»] chr3 (1 HSPs)
chr3 (40-342)||(4664722-4665034)
[»] chr4 (3 HSPs)
chr4 (965-1056)||(3187535-3187631)
chr4 (996-1058)||(21355939-21356001)
chr4 (996-1030)||(23218205-23218239)
[»] scaffold1300 (1 HSPs)
scaffold1300 (982-1029)||(755-802)
[»] chr1 (2 HSPs)
chr1 (964-1056)||(17480946-17481032)
chr1 (988-1030)||(20727521-20727562)
[»] scaffold1084 (1 HSPs)
scaffold1084 (982-1016)||(1434-1468)
[»] chr2 (1 HSPs)
chr2 (996-1030)||(3935357-3935391)


Alignment Details
Target: chr5 (Bit Score: 504; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 353 - 1058
Target Start/End: Complemental strand, 23738662 - 23737954
Alignment:
Q  353 cttcggctttcactttttatccggcaacattatcaagcattttggtgttatgcttcgatttcccctgcataatcaattcggagggaactttaatacatag 452  Q
    |||| ||||||||||| |||||||||||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||| |||    
T  23738662 cttcagctttcactttctatccggcaacattctcaagcattttggtgatatgcttcaatttcacctgcataatcaattcggagggaactttaatacttag 23738563  T
Q  453 tacaatcttccattattttttnnnnnnnnt-ggatagatcaaagatagttctaaattgcagtccgcaacttaatagcaggccacatcatcgacatcattt 551  Q
    ||||||||||||||||||| |          |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  23738562 tacaatcttccattattttataaaaaaaaaaggatagatcaaagatagttctaaattgcagtccgcaacttaatagcgggccgcatcatcgacatcattt 23738463  T
Q  552 ttactgca-tataaaagttcgcattgcagcttcaaccgcaatgtaaaactaac-taccattttgattgaattaacaatttacctccgnnnnnnnttcatg 649  Q
    |||||||| |||||||||||| |    ||||||||||||||| |||||| | | |||| ||||||||||||||||||| ||||||||       ||||||    
T  23738462 ttactgcaatataaaagttcgtagcatagcttcaaccgcaatttaaaaccatcgtacccttttgattgaattaacaatctacctccgaaaaaaattcatg 23738363  T
Q  650 gcgtaagaaaaccctcttttgttacataaaacaacagtctttgattcactgcaaaggaaaaagaggctaatcatcaaactgctttgaataaacaacattt 749  Q
    |||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  23738362 gcgtaagaaaaccctcttttcttacctaaaacagcagtctttgattcactgcaaaggaaaaagaggcttttcatcaaactgctttgaataaacaacattt 23738263  T
Q  750 gttattgttcctaaaccaagaacattgaaaaacacagcatggtactaaaacaaaaacataacattgttaaatcaaatgcaaaactcatgaaataaactac 849  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23738262 gttattgttcctaaaccaagaacattgaaaaacacaacatggtactaaaacaaaaacataacattgttaaatcaaatgcaaaactcacgaaataaactac 23738163  T
Q  850 acactaaatcactttacaaccaccattttagcataaagacacaaactttcataaattttttgataacctatttcacagaacatttcatacagcaaacaag 949  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23738162 acactaaatcactttccaaccaccattttagcataaagacacagactttcataaactttttgataacctatttcacagaacatttcatacagcaaacaag 23738063  T
Q  950 acatatttaatcactaatcaactaggtttaacaacaacagatggaaaactcatggcaatcaactaaagaacatgaaatcattaaagaagaattagatttg 1049  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  23738062 acatatgtaatcactaatcaactaggtttaacaacaacagatggaaaactcatggcaatcaactaaagaacatgtaatcattaaagaagaatcagatttg 23737963  T
Q  1050 aaggaaatt 1058  Q
    |||||||||    
T  23737962 aaggaaatt 23737954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 353 - 1058
Target Start/End: Original strand, 19208454 - 19209159
Alignment:
Q  353 cttcggctttcactttttatccggcaacattatcaagcattttggtgttatgcttcgatttcccctgcataatcaattcggagggaactttaatacatag 452  Q
    |||| ||||||||||| ||| |||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| |||    
T  19208454 cttcagctttcactttctattcggcaacattctcaagcattttggtgatatgcttcaatttcccctgcataatcaattcgaagggaactttaatacttag 19208553  T
Q  453 tacaatcttccattattttttnnnnnnnntggatagatcaaagatagttctaaattgcagtccgcaacttaatagcaggccacatcatcgacatcatttt 552  Q
    ||||||||||||||||||| |         |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  19208554 tacaatcttccattattttataaaaaaaa-ggatagatcaaagatagttctaaattgcagtccgcaacttaatagcgggccgcatcatcgacatcatttt 19208652  T
Q  553 tactgca-tataaaagttcgcattgcagcttcaaccgcaatgtaaaactaac-taccattttgattgaattaacaatttacctccgnnnnnnnttcatgg 650  Q
    ||||||| |||||||||| |||    ||||||||||||||| |||||| | | |||| ||||||||||||||||||| ||||||||       |||||||    
T  19208653 tactgcaatataaaagtttgcagcatagcttcaaccgcaatttaaaacgatcgtacccttttgattgaattaacaatctacctccgaaaaaaattcatgg 19208752  T
Q  651 cgtaagaaaaccctcttttgttacataaaacaacagtctttgattcactgcaaaggaaaaagaggctaatcatcaaactgctttgaataaacaacatttg 750  Q
    ||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||    
T  19208753 cgtaagaaaaccctcttttct-acctaaaacaacagtctttgattcactgcaaaggaaaaagaggcttttcatcaaactgctttgaataaacaacacttg 19208851  T
Q  751 ttattgttcctaaaccaagaacattgaaaaacacagcatggtactaaaacaaaaacataacattgttaaatcaaatgcaaaactcatgaaataaactaca 850  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19208852 ttattgttcctaaaccaagaacattgaaaaacacaacatggtactaaaacaaaaacataacattgttaaatcaaatgcaaaactcacgaaataaactaca 19208951  T
Q  851 cactaaatcactttacaaccaccattttagcataaagacacaaactttcataaattttttgataacctatttcacagaacatttcatacagcaaacaaga 950  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||    
T  19208952 cactaaatcactttccaaccaccattttagcataaagacacaaactttcataaattttttgatagcctatttcacagaacatttcatacagcaaactaga 19209051  T
Q  951 catatttaatcactaatcaactaggtttaacaacaacagatggaaaactcatggcaatcaactaaagaacatgaaatcattaaagaagaattagatttga 1050  Q
    ||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||    
T  19209052 catatgtactaactaatcaactaggtttaacaacaacagatggaaaactcatggcaatcaactaaagaacatgtaatcattaaagcagaatcagatttga 19209151  T
Q  1051 aggaaatt 1058  Q
    ||||||||    
T  19209152 aggaaatt 19209159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 678 - 1058
Target Start/End: Complemental strand, 43300624 - 43300246
Alignment:
Q  678 aaacaacagtctttgattcactgcaaaggaaaaagaggctaatcatcaaactgctttgaataaacaacatttgttattgttcctaaaccaagaacattga 777  Q
    ||||| ||| |||||||||| |||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43300624 aaacagcaggctttgattcaatgcaaaggaaaaagaggcttttcatcacactgctttgaataaacaacatttgttattgttcctaaaccaagaacattga 43300525  T
Q  778 aaaacacagcatggtactaaaacaaaaacataacattgttaaatcaaatgcaaaactcatgaaataaactacacactaaatcactttacaaccaccattt 877  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||| ||||||||||||||| ||||||||||||    
T  43300524 aaaacacagcatagtactaaaacaaaaacataacatagttaaatcaaaagcaaaactcatgaaacaaactatacactaaatcactttccaaccaccattt 43300425  T
Q  878 tagcataaagacacaaactttcataaattttttgataacctatttcacagaacatttcatacagcaaacaagacatatttaatcactaatcaactaggtt 977  Q
    |||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||  || || ||||||||||||||||||    
T  43300424 tagcgtaaagacacaaactttcataaattttttgatgacccatttcacagaacatttcatacagcaaacaagac--atgtattcactaatcaactaggtt 43300327  T
Q  978 taacaacaacagatggaaaactcatggcaatcaactaaagaacatgaaatcattaaagaagaattagatttgaaggaaatt 1058  Q
    ||||||||||||||||||||||||| | ||||||| |||||||||| ||||||||||||| ||| ||| ||||| ||||||    
T  43300326 taacaacaacagatggaaaactcattgaaatcaacaaaagaacatgtaatcattaaagaaaaatcagaattgaacgaaatt 43300246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 237; E-Value: 1e-130
Query Start/End: Original strand, 678 - 1058
Target Start/End: Original strand, 41958262 - 41958645
Alignment:
Q  678 aaacaacagtctttgattcactgcaaaggaaaaagaggctaatcatcaaactgctttgaataaacaacatttgttattgt------tcctaaaccaagaa 771  Q
    ||||| ||| |||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||      ||||||||||| ||    
T  41958262 aaacagcaggctttgattcaatgcaaaggaaaaagaggcttttcatcaaactgctttgaataaacaacatttgttattgtatttgttcctaaaccaaaaa 41958361  T
Q  772 cattgaaaaacacagcatggtactaaaacaaaaacataacattgttaaatcaaatgcaaaactcatgaaataaactacacactaaatcactttacaacca 871  Q
    ||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||    
T  41958362 catcgaaaaacacagcatagtactaaaacaaaaacataacatagttaaatcaaatgcaaaactcatgaaacaaactatacactaaatcactttccaacca 41958461  T
Q  872 ccattttagcataaagacacaaactttcataaattttttgataacctatttcacagaacatttcatacagcaaacaagacatatttaatcactaatcaac 971  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||| ||||||  || || ||||||||||||    
T  41958462 ccattttagcataaagacacaaacttacataaattttttgatgacccatttcacagaacatttcatacagcaatcaagac--atgtattcactaatcaac 41958559  T
Q  972 taggtttaacaacaacagatggaaaactcatggcaatcaactaaagaacatgaaatcattaaagaagaattagatttgaaggaaatt 1058  Q
    ||||||||||||||||| ||||||| ||||| | ||||||||||| |||||| ||||||||||||| ||| ||| ||||| ||||||    
T  41958560 taggtttaacaacaacatatggaaagctcattgaaatcaactaaa-aacatgtaatcattaaagaaaaatcagaattgaacgaaatt 41958645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 735 - 926
Target Start/End: Complemental strand, 28450679 - 28450488
Alignment:
Q  735 gaataaacaacatttgttattgttcctaaaccaagaacattgaaaaacacagcatggtactaaaacaaaaacataacattgttaaatcaaatgcaaaact 834  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||| ||||||||||||    
T  28450679 gaataaacaacatttgttattgttcctaaaccaagaacattgaaaaacacaacatagtactaaaacaaaaacataacatagttaaattaaatgcaaaact 28450580  T
Q  835 catgaaataaactacacactaaatcactttacaaccaccattttagcataaagacacaaactttcataaattttttgataacctatttcaca 926  Q
    ||||||| ||||||   ||||||||||||| |||||||||||||||| |||||| | ||||||||||||||| |||||| ||| ||||||||    
T  28450579 catgaaacaaactattaactaaatcactttccaaccaccattttagcctaaagatataaactttcataaattctttgatgacccatttcaca 28450488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 355 - 697
Target Start/End: Complemental strand, 28451533 - 28451194
Alignment:
Q  355 tcggctttcactttttatccggcaacattatcaagcattttggtgttatgcttcgatttcccctgcataatcaattcggagggaactttaatacatagta 454  Q
    |||||||||||||| |  ||||||||||| ||||||||||||| | || ||||| ||||||||||||||||||||| ||||||||||||||||| |||||    
T  28451533 tcggctttcactttctgcccggcaacattctcaagcattttggagctaggcttcaatttcccctgcataatcaatttggagggaactttaatacttagta 28451434  T
Q  455 caatcttccattattttttnnnnnnnntggatagatcaaagatagttctaaattgcagtccgcaacttaatagcaggccacatcatcgacatcattttta 554  Q
    ||||||||||||||||| |        | ||||||||  | ||||||||||||||||||||||||||||||||| ||   |||||   ||| || |||||    
T  28451433 caatcttccattattttat-taaaaagtagatagatc--atatagttctaaattgcagtccgcaacttaatagcgggttgcatca--aacagca-tttta 28451340  T
Q  555 ctgc-atataaaagttcgcattgcagcttcaaccgcaatgtaaaactaac-taccattttgattgaattaacaatttacctccg-nnnnnnnttcatggc 651  Q
    |||| |||||||||||||||    ||||| ||||||| | |||||| | | |||  ||||||||||||||| || ||||||| |        ||||||||    
T  28451339 ctgcaatataaaagttcgcagcatagcttgaaccgcagtttaaaaccatcatacacttttgattgaattaaaaacttacctctgaaaaaacattcatggc 28451240  T
Q  652 gtaagaaaaccctcttttgttacataaaacaacagtctttgattca 697  Q
     | |||||||||||||||||||| ||||||| ||| ||||||||||    
T  28451239 atcagaaaaccctcttttgttacctaaaacagcaggctttgattca 28451194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 740 - 813
Target Start/End: Complemental strand, 28450786 - 28450713
Alignment:
Q  740 aacaacatttgttattgttcctaaaccaagaacattgaaaaacacagcatggtactaaaacaaaaacataacat 813  Q
    |||||||||||| ||||||||| |||||| |||||||||||||||| ||| |||||||||||||||||||||||    
T  28450786 aacaacatttgtcattgttccttaaccaaaaacattgaaaaacacaacatagtactaaaacaaaaacataacat 28450713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 207 - 324
Target Start/End: Original strand, 42294572 - 42294696
Alignment:
Q  207 gtatcccaagctaaactttccaaacttcctctcactatatcattgtctcagtcttcttcacaaccttatcc------cttcatgcaacatattagca-tt 299  Q
    ||||||||||| | |||||||||||||||| ||||  || |||||||||| ||||||||||||||||||||      ||||||||||||| ||| || ||    
T  42294572 gtatcccaagcaatactttccaaacttcctttcacagtaccattgtctcaatcttcttcacaaccttatccgttcatcttcatgcaacattttaacattt 42294671  T
Q  300 atagcaatctgcaacactttattct 324  Q
    ||| |||||| ||||||||||||||    
T  42294672 atatcaatctacaacactttattct 42294696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 222 - 321
Target Start/End: Original strand, 42300721 - 42300820
Alignment:
Q  222 ctttccaaacttcctctcactatatcattgtctcagtcttcttcacaaccttatcccttcatgcaacatattagcattatagcaatctgcaacactttat 321  Q
    ||||||||||||||| |||| ||| |||||||||| ||||||||||||||  ||| ||| ||| | ||||||| |||||||   ||||| ||||||||||    
T  42300721 ctttccaaacttcctttcacaataccattgtctcaatcttcttcacaaccacatctcttaatgtagcatattaacattatattgatctgaaacactttat 42300820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 232 - 321
Target Start/End: Original strand, 42294206 - 42294294
Alignment:
Q  232 ttcctctcactatatcattgtctcagtcttcttcacaaccttatcccttcatgcaacatattagcattatagcaatctgcaacactttat 321  Q
    ||||| |||| ||| |||| ||| ||||||||||||||| ||||||| | ||||| |||| |||||||||| |||| |||||||||||||    
T  42294206 ttcctttcacaataccattatcttagtcttcttcacaacattatcccattatgcagcata-tagcattatatcaatatgcaacactttat 42294294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 699 - 737
Target Start/End: Complemental strand, 28451169 - 28451131
Alignment:
Q  699 tgcaaaggaaaaagaggctaatcatcaaactgctttgaa 737  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  28451169 tgcaaaggaaaaagaggcttttcatcaaactgctttgaa 28451131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 270; Significance: 1e-150; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 655 - 1058
Target Start/End: Complemental strand, 43916575 - 43916173
Alignment:
Q  655 agaaaaccctcttttgttacataaaacaacagtctttgattcactgcaaaggaaaaa-gaggctaatcatcaaactgctttgaataaacaacatttgtta 753  Q
    ||||||||||||||||||||  |||||||||  |||||||||| ||||||||||||| |||| |  |||||||||||||||||||||||| |||||||||    
T  43916575 agaaaaccctcttttgttacccaaaacaacatgctttgattcaatgcaaaggaaaaaagaggtttttcatcaaactgctttgaataaacagcatttgtta 43916476  T
Q  754 ttgttcctaaaccaagaacattgaaaaacacagcatggtactaaaacaaaaacataacattgttaaatcaaatgcaaaactcatgaaataaactacacac 853  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |  ||||    
T  43916475 ttgttcctaaaccaagaacattgaaaaacacaacatagtactaaaacaaaaacataacatagttaaatcaaatgcaaaactcatgaaacaaattgtacac 43916376  T
Q  854 taaatcactttacaaccaccattttagcataaagacacaaactttcataaattttttgataacctatttcacagaacatttcatacagcaaacaagacat 953  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    || || ||| |||||||||||||||||||||||||||||||||      
T  43916375 taaatcactttccaaccaccattttagcataaagacacaaactttcataaaaaaatttatgacccatttcacagaacatttcatacagcaaacaagac-- 43916278  T
Q  954 atttaatcactaatcaactaggtttaacaacaacagatggaaaactcatggcaatcaactaaagaacatgaaatcattaaagaagaattagatttgaagg 1053  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||| |||||||||||    
T  43916277 atgtaatcactaatcaactaggtttaacaacaacagatggaaaactcatggcaatcaactaaataacatgcaatcgttaaagaagaatcagatttgaagg 43916178  T
Q  1054 aaatt 1058  Q
    |||||    
T  43916177 aaatt 43916173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 982 - 1016
Target Start/End: Original strand, 11472225 - 11472259
Alignment:
Q  982 aacaacagatggaaaactcatggcaatcaactaaa 1016  Q
    |||||||||||||||||||||||||||||||||||    
T  11472225 aacaacagatggaaaactcatggcaatcaactaaa 11472259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 996 - 1030
Target Start/End: Complemental strand, 1668239 - 1668205
Alignment:
Q  996 aactcatggcaatcaactaaagaacatgaaatcat 1030  Q
    |||||||||||||||||||||||||||| ||||||    
T  1668239 aactcatggcaatcaactaaagaacatgtaatcat 1668205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 996 - 1030
Target Start/End: Complemental strand, 16658954 - 16658920
Alignment:
Q  996 aactcatggcaatcaactaaagaacatgaaatcat 1030  Q
    |||||||||||||||||||||||||||| ||||||    
T  16658954 aactcatggcaatcaactaaagaacatgtaatcat 16658920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 996 - 1030
Target Start/End: Original strand, 38521211 - 38521245
Alignment:
Q  996 aactcatggcaatcaactaaagaacatgaaatcat 1030  Q
    |||||||||||||||||||||||||||| ||||||    
T  38521211 aactcatggcaatcaactaaagaacatgtaatcat 38521245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 270; Significance: 1e-150; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 678 - 1058
Target Start/End: Complemental strand, 44660759 - 44660381
Alignment:
Q  678 aaacaacagtctttgattcactgcaaaggaaaaagaggctaatcatcaaactgctttgaataaacaacatttgttattgttcctaaaccaagaacattga 777  Q
    ||||| ||| |||||||||| |||||||||||||||| ||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  44660759 aaacagcaggctttgattcaatgcaaaggaaaaagagacttttcatcaaactgcttcgaataaacaacatttgttattgttcctaaaccaagaacattga 44660660  T
Q  778 aaaacacagcatggtactaaaacaaaaacataacattgttaaatcaaatgcaaaactcatgaaataaactacacactaaatcactttacaaccaccattt 877  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||    
T  44660659 aaaacacagcatagtactaaaacaaaaacataacatagttaaatcaaatgcaaaactcatgaaacaaactatacactaaatcactttccaaccaccattt 44660560  T
Q  878 tagcataaagacacaaactttcataaattttttgataacctatttcacagaacatttcatacagcaaacaagacatatttaatcactaatcaactaggtt 977  Q
    |||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||  || || ||||||||||||||||||    
T  44660559 tagcataaagacacaaactttcataaatcttttgatgacccatttcacagaacatttcatacagcaaacaagac--atgtattcactaatcaactaggtt 44660462  T
Q  978 taacaacaacagatggaaaactcatggcaatcaactaaagaacatgaaatcattaaagaagaattagatttgaaggaaatt 1058  Q
    |||||||||| |||||||||||||| | |||||||||||||||||| ||||||||||||| ||| ||| ||||| ||||||    
T  44660461 taacaacaacggatggaaaactcattgaaatcaactaaagaacatgtaatcattaaagaaaaatcagaattgaacgaaatt 44660381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 40 - 342
Target Start/End: Original strand, 4664722 - 4665034
Alignment:
Q  40 taaaaaataagaatcacatggtacctattccattgatggcatggtatgtccggccttcttccacaataactctgc----------cgcgtccatgtaatg 129  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||          || ||||||||||      
T  4664722 taaaaaataagaatcacatggtacctgttccattgatggcatggtatgtccggccttcttccacaacaactctgcataactctgtcgtgtccatgtaaaa 4664821  T
Q  130 aacacagacacatcactaaacaatctgcaattttgcacttgttaacaaataggttgatcttcaaacacttcgtcctagtatcccaagctaaactttccaa 229  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||    
T  4664822 aacacggacacatcactaaacaatctgcaattttgcacttgttaacaaataggttgatcttcaaacactttttcctagtatcccaagctatactttccaa 4664921  T
Q  230 acttcctctcactatatcattgtctcagtcttcttcacaaccttatcccttcatgcaacatattagcattatagcaatctgcaacactttattctgctgt 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4664922 acttcctctcactatatcattgtctcagtcttcttcacaaccttatcccttcatgcaacatattagcattatagcaatctgcaacactttattctgctga 4665021  T
Q  330 cacacaatctgca 342  Q
    |||||||||||||    
T  4665022 cacacaatctgca 4665034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 965 - 1056
Target Start/End: Original strand, 3187535 - 3187631
Alignment:
Q  965 aatcaactaggtttaacaacaacagatggaaaa-ctcatggcaatcaac----taaagaacatgaaatcattaaagaagaattagatttgaaggaaa 1056  Q
    |||||||||||||||||||||| ||||| |||| || |||||||||||     ||||||||||| |||||| |||||||||| |||||| |||||||    
T  3187535 aatcaactaggtttaacaacaatagatgaaaaaactgatggcaatcaatcaattaaagaacatgtaatcatcaaagaagaatcagatttaaaggaaa 3187631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 996 - 1058
Target Start/End: Complemental strand, 21356001 - 21355939
Alignment:
Q  996 aactcatggcaatcaactaaagaacatgaaatcattaaagaagaattagatttgaaggaaatt 1058  Q
    ||||||||| |||||||||||||||||| |||||| |||  ||||| ||| ||||||||||||    
T  21356001 aactcatggaaatcaactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaatt 21355939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 996 - 1030
Target Start/End: Original strand, 23218205 - 23218239
Alignment:
Q  996 aactcatggcaatcaactaaagaacatgaaatcat 1030  Q
    |||||||||||||||||||||||||||| ||||||    
T  23218205 aactcatggcaatcaactaaagaacatgtaatcat 23218239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1300 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1300
Description:

Target: scaffold1300; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 982 - 1029
Target Start/End: Original strand, 755 - 802
Alignment:
Q  982 aacaacagatggaaaactcatggcaatcaactaaagaacatgaaatca 1029  Q
    ||||| ||||||||||||||||| |||||||||||||||||| |||||    
T  755 aacaatagatggaaaactcatggtaatcaactaaagaacatgtaatca 802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 964 - 1056
Target Start/End: Original strand, 17480946 - 17481032
Alignment:
Q  964 taatcaactaggtttaacaacaacagatggaaaactcatggcaatcaactaaagaacatgaaatcattaaagaagaattagatttgaaggaaa 1056  Q
    |||||||||||||||||||||| ||      |||||||||| ||||||  |||||||||| |||||| |||||| ||| | ||||||||||||    
T  17480946 taatcaactaggtttaacaacagca------aaactcatggaaatcaatcaaagaacatgtaatcatcaaagaataatcatatttgaaggaaa 17481032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 988 - 1030
Target Start/End: Complemental strand, 20727562 - 20727521
Alignment:
Q  988 agatggaaaactcatggcaatcaactaaagaacatgaaatcat 1030  Q
    |||||||||||||||||||||||| ||||||||||| ||||||    
T  20727562 agatggaaaactcatggcaatcaa-taaagaacatgtaatcat 20727521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1084 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold1084
Description:

Target: scaffold1084; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 982 - 1016
Target Start/End: Complemental strand, 1468 - 1434
Alignment:
Q  982 aacaacagatggaaaactcatggcaatcaactaaa 1016  Q
    ||||||||||||||||||| |||||||||||||||    
T  1468 aacaacagatggaaaactcgtggcaatcaactaaa 1434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 996 - 1030
Target Start/End: Original strand, 3935357 - 3935391
Alignment:
Q  996 aactcatggcaatcaactaaagaacatgaaatcat 1030  Q
    |||||||||||||||||||||||||||| ||||||    
T  3935357 aactcatggcaatcaactaaagaacatgtaatcat 3935391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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