View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3636_high_11 (Length: 442)
Name: NF3636_high_11
Description: NF3636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3636_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 13885224 - 13885649
Alignment:
| Q |
1 |
atctcaaattgatgaacagtatgtgtgtgcgcgcgtgcgcgtgcttgtaacttcgtataacttctataagtagtttcata-ataagttctactactttgg |
99 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
13885224 |
atctcaaattgatgaacagtatgtgtgtgcgcgcatgcacgtgcttgtaacttcgtataacttctataagtagtttcatatataagttctactactttgg |
13885323 |
T |
|
| Q |
100 |
tcattatgcaaacaatggcagtgcttctgctacaagccataaacttttgtgtaggttttttatttaattggctatgtgaatatatttaaaacaagtgatt |
199 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
13885324 |
tcattatgcaaacaatggcagtgcttctgctacatgccataaacttttgtgtaggttttttatttaattggctatgtgaatatattgaaaacaagtgatt |
13885423 |
T |
|
| Q |
200 |
tctccacaaatctcaaggtaaaagaacatgactcacatgataatagagttgctgcataatagtattgcagtcatttactgtcccttgaaatctgattcca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
13885424 |
gctccacaaatctcaaggtaaaagaacatgactcacatgataatagagttgctgcataacagtattgcagtcatttactgtcccttgaaatctgattcca |
13885523 |
T |
|
| Q |
300 |
ctggctttgaccataaagtgctttgagatagttacatatgtttgaagaggctgccactgataattattcatgtgcttaaattcagttgtgttgatcaaat |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
13885524 |
ctggctttgaccataaagtgctttgagatagttacatatgtttgaagaggctgccactgataattattcctgtgcttaaattcagttgtgttgatcaaat |
13885623 |
T |
|
| Q |
400 |
gagatggaagatttgtagctaataat |
425 |
Q |
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| T |
13885624 |
gagatggaagatttgtagctaataat |
13885649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 14025349 - 14025774
Alignment:
| Q |
1 |
atctcaaattgatgaacagtatgtgtgtgcgcgcgtgcgcgtgcttgtaacttcgtataacttctataagtagtttcata-ataagttctactactttgg |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14025349 |
atctcaaattgatgaacagtatgtgtgtgcgcgcatgcacgtgcttgtaacttcgtataacttctataagtagtttcatatataagttctactactttgg |
14025448 |
T |
|
| Q |
100 |
tcattatgcaaacaatggcagtgcttctgctacaagccataaacttttgtgtaggttttttatttaattggctatgtgaatatatttaaaacaagtgatt |
199 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
14025449 |
tcattatgcaaacaatggcagtgcttctgctacatgccataaacttttgtgtaggttttttatttaattggctatgtgaatatattgaaaacaagtgatt |
14025548 |
T |
|
| Q |
200 |
tctccacaaatctcaaggtaaaagaacatgactcacatgataatagagttgctgcataatagtattgcagtcatttactgtcccttgaaatctgattcca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14025549 |
gctccacaaatctcaaggtaaaagaacatgactcacatgataatagagttgctgcataacagtattgcagtcatttactgtcccttgaaatctgattcca |
14025648 |
T |
|
| Q |
300 |
ctggctttgaccataaagtgctttgagatagttacatatgtttgaagaggctgccactgataattattcatgtgcttaaattcagttgtgttgatcaaat |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
14025649 |
ctggctttgaccataaagtgctttgagatagttacatatgtttgaagaggctgccactgataattattcctgtgcttaaattcagttgtgttgatcaaat |
14025748 |
T |
|
| Q |
400 |
gagatggaagatttgtagctaataat |
425 |
Q |
| |
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|||||||||||||||||||||||||| |
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|
| T |
14025749 |
gagatggaagatttgtagctaataat |
14025774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 169; Significance: 2e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 187 - 415
Target Start/End: Original strand, 7685468 - 7685696
Alignment:
| Q |
187 |
aaaacaagtgatttctccacaaatctcaaggtaaaagaacatgactcacatgataatagagttgctgcataatagtattgcagtcatttactgtcccttg |
286 |
Q |
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||||||||||||||| || |||| ||| |||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
7685468 |
aaaacaagtgatttcccctcaaacctcgaggtaaaaaaacacgactcacatgataatagagttgctgcataacagtattgcagtcatttactgtggcttg |
7685567 |
T |
|
| Q |
287 |
aaatctgattccactggctttgaccataaagtgctttgagatagttacatatgtttgaagaggctgccactgataattattcatgtgcttaaattcagtt |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| | ||||||| |
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| T |
7685568 |
aaatctgattccactggctttgaccataaagtgctttgagatagttacatatgtttgaagaggctgccactgaaagttattcatgtgcttcagttcagtt |
7685667 |
T |
|
| Q |
387 |
gtgttgatcaaatgagatggaagatttgt |
415 |
Q |
| |
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||||| ||||| ||||||||||||||||| |
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| T |
7685668 |
gtgtttatcaagtgagatggaagatttgt |
7685696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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