View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3636_high_18 (Length: 348)
Name: NF3636_high_18
Description: NF3636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3636_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 33994591 - 33994904
Alignment:
| Q |
18 |
tgtccaacctgtgctttctggtaaatatttacatcatcactattatttactattgcttattgtttcaatttattttgttacatttcttaaacttttagtc |
117 |
Q |
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| T |
33994591 |
tgtccagcctgtgctttctggtaaatatttacatcatcactattatttactattgcttattgtttcaatttattttgttacatttcttaaacttttagtc |
33994690 |
T |
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| Q |
118 |
cttaagattataggtggcaagtgaaccttatctaatattctctgctgttaattatgttatcatgatcattgatttgagatccgacggtccaaatattccg |
217 |
Q |
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| T |
33994691 |
cttaagattataggtggcaagtgaaccttatctaatattctctgctgttaattatgttatcatgatcattgatttgagatccgacggtccaaatattccg |
33994790 |
T |
|
| Q |
218 |
tctcgctgttacagcagagaatccaaattcatctaaaaatgttgttgtgaataggtgtttctgttggagctgggtggcaaagtgtcgtagcatatgtaaa |
317 |
Q |
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| T |
33994791 |
tctcgctgttacagcagagaatccaaattcatctaaaaatgttgttgtgaataggtgtttctgttggagctgggtggcaaagtgttgtagcatatgtaaa |
33994890 |
T |
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| Q |
318 |
cataggctgctatt |
331 |
Q |
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| T |
33994891 |
cataggctgctatt |
33994904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 331
Target Start/End: Original strand, 33986409 - 33986472
Alignment:
| Q |
268 |
ataggtgtttctgttggagctgggtggcaaagtgtcgtagcatatgtaaacataggctgctatt |
331 |
Q |
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| T |
33986409 |
ataggagttgctgttggagctggctggcaaagcgttgcagcatatgtaaacataggctcctatt |
33986472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 267 - 323
Target Start/End: Complemental strand, 9234562 - 9234506
Alignment:
| Q |
267 |
aataggtgtttctgttggagctgggtggcaaagtgtcgtagcatatgtaaacatagg |
323 |
Q |
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| T |
9234562 |
aataggagtttctgttggagctgggtggcaaaggattgtagcatatgtaaacatagg |
9234506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 267 - 323
Target Start/End: Complemental strand, 9214796 - 9214740
Alignment:
| Q |
267 |
aataggtgtttctgttggagctgggtggcaaagtgtcgtagcatatgtaaacatagg |
323 |
Q |
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| T |
9214796 |
aataggagtttctgttggagctggatggcaaagcattgtagcatatgtaaacatagg |
9214740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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