View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3636_high_22 (Length: 277)
Name: NF3636_high_22
Description: NF3636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3636_high_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 14 - 261
Target Start/End: Complemental strand, 12546669 - 12546422
Alignment:
| Q |
14 |
ttctgatcttgtttatatgtattcaacacataaatgaatagtccatgatgttcctctattaacctcattattgaattctcttattcattctagcatgggt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12546669 |
ttctgatcttgtttatatgtattcaacacataaatgaatagtccatgatgttcctctattaacctcattattgaattctcttattcattctagcatgggt |
12546570 |
T |
|
| Q |
114 |
aattagttgtttggaatttaaaaacagttgcagcaatttattttaattgtcaactgtaggaatcatatgcacaaagatgttttaacttgatcgaagaaca |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12546569 |
aattagttgtttggaatttaaaaacagttgcagcaatttattttaattgtcaactgtaggaatcatatgcacaaagatgttttaacttgattgaagaaca |
12546470 |
T |
|
| Q |
214 |
tgcgcctggcttctgctcatccgtcatagattatgacatgctaacacc |
261 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12546469 |
tgcgcctggcttctgctcatccgtcataggttatgacatgctaacacc |
12546422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University