View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3636_high_3 (Length: 739)

Name: NF3636_high_3
Description: NF3636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3636_high_3
NF3636_high_3
[»] chr3 (1 HSPs)
chr3 (4-684)||(37321981-37322661)


Alignment Details
Target: chr3 (Bit Score: 649; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 649; E-Value: 0
Query Start/End: Original strand, 4 - 684
Target Start/End: Original strand, 37321981 - 37322661
Alignment:
Q  4 actcaccagtactagatatcatatggcctataagctttcatatatggttcattctcaaaccacctcgtgccaatactctcgtactatttttaatgtcaat 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37321981 actcaccagtactagatatcatatggcctataagctttcatatatggttcattctcaaaccacctcgtgccaatactctcgtactatttttaatgtcaat 37322080  T
Q  104 agacactattcattcatgcatccgtgatgtaaattttcaatataaatcacccaaaacgtcacatttccaatccttgaaagtctttaaaacaatgttttag 203  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37322081 agacactactcattcatgcatccgtgatgtaaattttcaatataaagcacccaaaacgtcacatttccaatccttgaaagtctttaaaacaatgtcttag 37322180  T
Q  204 aagcatataaagaaaccgccttgtatatatatgatttggttgcttatataagagtattgggggataaaaagacccattaggcacatcaaataggtttttc 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37322181 aagcatataaagaaaccgccttgtatatatatgatttggttgcttatataagagtattgggggataaaaagacccattaggcacatcaaataggtttttc 37322280  T
Q  304 ataaattctactagcttatcatcaaaagcacggtcaaatagaaaatcataagttccaatacaatctcaacaagaatggatagaatcaacatccaataatt 403  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37322281 ataaattctactagcttatcatcaaaagcacagtcaaatagaaaatcataagttccaatacaatctcaacaagaatggatagaatcaacatccaataatt 37322380  T
Q  404 tgctattgttagaagttgatagataatattgtggaaactttataatttatatattactacaatggtgtgttatttagatacatgattgcaacttgatatc 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37322381 tgctattgttagaagttgatagataatattgtggaaactttataatttatatattactacaatggtgtgttatttagatacatgattgcaacttgatatc 37322480  T
Q  504 tcttgagtgtgaagtggagatgaattctttcatggcatataagagtctattgaaatcatcaccttctattataaaagagagacaaatcaaatgtatacaa 603  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  37322481 tcttgagtgtgaagtggagatgaattctttcatggcatgtaagagtctattgaaatcatcaccttctattatcaaagagagataaatcaaatgtatacaa 37322580  T
Q  604 agaaaaggtgatttaagggtatagaacacttgagaaaatacaagaaaattaaaaatgaattttgggggtccattttcgtgt 684  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37322581 agaaaaggtgatttaagggtatagaacacttgagaaaatacaagaaaattaaaaataaattttgggggtccattttcgtgt 37322661  T

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