View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3636_high_30 (Length: 244)
Name: NF3636_high_30
Description: NF3636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3636_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 34254008 - 34253779
Alignment:
| Q |
1 |
caatagttcatagcatacattttttgaatggttaaacaaaaaaccactcaccttgattccatgaataaggattaagatgaagggtattgccatctgaatt |
100 |
Q |
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| T |
34254008 |
caatagttcatagcatacattttttgaatggttaaacacaaaaccactcaccttgattccatgaataaggattaagatgaagggtattgccatctgaatt |
34253909 |
T |
|
| Q |
101 |
aatatgaaaaggaccaatttcctcagcctcaccataagcaatagatgaacaaccaggaccaccattgaaccataaaagaagaggttttgaagtaggatct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34253908 |
aatatgaaaaggaccaatttcctcagcctcaccataagcaatagatgaacaaccaggaccaccattgaaccataaaagaagaggttttgaagtaggatct |
34253809 |
T |
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| Q |
201 |
atatgatctgcttcaatgaaccagtaaaat |
230 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
34253808 |
atatgatctgcttcaatgaaccagtaaaat |
34253779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 48 - 229
Target Start/End: Complemental strand, 26641398 - 26641217
Alignment:
| Q |
48 |
tcaccttgattccatgaataaggattaagatgaagggtattgccatctgaattaatatgaaaaggaccaatttcctcagcctcaccataagcaatagatg |
147 |
Q |
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|||||||||||||| ||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
26641398 |
tcaccttgattccaagaataaggattaaaatgaaggtttttgccatctgaattaatatgaaaaggaccaatttcctcagcttcaccataagcaatagaag |
26641299 |
T |
|
| Q |
148 |
aacaaccaggaccaccattgaaccataaaagaagaggttttgaagtaggatctatatgatctgcttcaatgaaccagtaaaa |
229 |
Q |
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| T |
26641298 |
aacaaccaggaccaccattgaaccacaaaagaagtggcttagaagtaggatctacatgatcagcttgaatgaaccagtaaaa |
26641217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 46 - 229
Target Start/End: Complemental strand, 26633935 - 26633752
Alignment:
| Q |
46 |
actcaccttgattccatgaataaggattaagatgaagggtattgccatctgaattaatatgaaaaggaccaatttcctcagcctcaccataagcaataga |
145 |
Q |
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|||||||||||||||| |||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26633935 |
actcaccttgattccaataataaggattaaaatgaaggtttttgccatctgaattaatatgaaaaggaccaatttcctcagcttcaccataagcaataga |
26633836 |
T |
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| Q |
146 |
tgaacaaccaggaccaccattgaaccataaaagaagaggttttgaagtaggatctatatgatctgcttcaatgaaccagtaaaa |
229 |
Q |
| |
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|
| T |
26633835 |
agaacaaccaggaccaccattgagccacaaaagaagtggctttgaagtaggatctacatgatcagcttgaatgaaccagtaaaa |
26633752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 26626412 - 26626191
Alignment:
| Q |
14 |
catacattttttgaatggttaaacaaaaaaccactc------accttgattccatgaataaggattaagatgaagggtattgccatctgaattaatatga |
107 |
Q |
| |
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||||||||||| ||| ||||||||||| || ||||| |||||||||||| ||||| |||||||||| ||||| ||| ||| |||||||||||| |
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| T |
26626412 |
catacatttttggaaaggttaaacaaagaatcactctaaatcaccttgattccaagaatatggattaagatagagggttttggaatcagaattaatatga |
26626313 |
T |
|
| Q |
108 |
aaaggaccaatttcctcagcctcaccataagcaatagatgaacaaccaggaccaccattgaaccataaaagaagaggttttgaagtaggatctatatgat |
207 |
Q |
| |
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||||| |||||||| ||||| |||||| |||||||||| |||||||||||||||||||||| ||| |||||||| || ||||||||||||||| ||||| |
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| T |
26626312 |
aaagggccaatttcttcagcttcaccaaaagcaatagaagaacaaccaggaccaccattgagccacaaaagaagtggcattgaagtaggatctacatgat |
26626213 |
T |
|
| Q |
208 |
ctgcttcaatgaaccagtaaaa |
229 |
Q |
| |
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| |||| ||||||||||||||| |
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|
| T |
26626212 |
cagcttgaatgaaccagtaaaa |
26626191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 177
Target Start/End: Original strand, 42981823 - 42981900
Alignment:
| Q |
100 |
taatatgaaaaggaccaatttcctcagcctcaccataagcaatagatgaacaaccaggaccaccattgaaccataaaa |
177 |
Q |
| |
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||||| |||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||| | |||||||| |
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| T |
42981823 |
taatacgaaaaggaccaatttcttcagaagcaccataagcaatagaagaacaaccaggaccaccattaagccataaaa |
42981900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 177
Target Start/End: Original strand, 42975932 - 42976003
Alignment:
| Q |
106 |
gaaaaggaccaatttcctcagcctcaccataagcaatagatgaacaaccaggaccaccattgaaccataaaa |
177 |
Q |
| |
|
|||||||||||||||| || | ||||||||||||| || |||||||||||||||||||| | |||||||| |
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|
| T |
42975932 |
gaaaaggaccaatttcttccgaagcaccataagcaatggaagaacaaccaggaccaccattaagccataaaa |
42976003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 45130067 - 45130119
Alignment:
| Q |
147 |
gaacaaccaggaccaccattgaaccataaaagaagaggttttgaagtaggatc |
199 |
Q |
| |
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||||||||||| |||||||||| ||| | || |||||||||||||| |||||| |
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| T |
45130067 |
gaacaaccaggtccaccattgagccaaagaacaagaggttttgaagaaggatc |
45130119 |
T |
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