View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3636_high_35 (Length: 231)
Name: NF3636_high_35
Description: NF3636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3636_high_35 |
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| [»] scaffold1391 (1 HSPs) |
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Alignment Details
Target: scaffold1391 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold1391
Description:
Target: scaffold1391; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 112 - 333
Alignment:
| Q |
1 |
tccatcaatccgatcagtgatccaattattggtgttgattttaaaacactgatttattctttcttccatgattatatatccagttatttccagttttcaa |
100 |
Q |
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| T |
112 |
tccaccaatccgattagtgatccaattattggtgttgattttaaaacactgatttattctttcttccatgattatatatccggttatttccagttttcaa |
211 |
T |
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| Q |
101 |
aattcaatttgttccaaagtcaaatttgacttttggttaattatttactg-nnnnnnnnnnnnccatagttg-caacgcgcacatgccgaaaaacatatg |
198 |
Q |
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| T |
212 |
aattcaatttgttacaaagtcaaatttgacttttggttaattatttactgcaacgaaaaaaaaacatagttgacaacgcgcacatgccgaaaaacatatg |
311 |
T |
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| Q |
199 |
taatgcgttatattgtattttt |
220 |
Q |
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|||||| | |||| |||||||| |
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| T |
312 |
taatgcataatatcgtattttt |
333 |
T |
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