View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3636_high_37 (Length: 216)
Name: NF3636_high_37
Description: NF3636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3636_high_37 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 16 - 168
Target Start/End: Original strand, 51311770 - 51311926
Alignment:
| Q |
16 |
aaaacattatatagttgactaatccaagaagaaaggctcccaactaatttcaaatcccaattt----agcattatcgctccatatttctggcaaagggcc |
111 |
Q |
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| T |
51311770 |
aaaacattatatagttgactaatccaagaagaaaggctcccaactaatttcaaaccccaatttcgttagcatcatcactccatatttctggcaaagggcc |
51311869 |
T |
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| Q |
112 |
agtgtcaagcgaacagtgagaagcaaagaacggtaaagaaacacataaaacatggca |
168 |
Q |
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| T |
51311870 |
agtgtcaagcgaacagtgagaagcaaagaacagtaaagaaacacataaaacatggca |
51311926 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 26863362 - 26863413
Alignment:
| Q |
157 |
taaaacatggcaaagctaaatcgatgatttgtgattcaatctgatgatgatg |
208 |
Q |
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| T |
26863362 |
taaaacaagacaaagctaaatcggtgatttgtgattcaatctgatgatgatg |
26863413 |
T |
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