View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3636_low_14 (Length: 431)
Name: NF3636_low_14
Description: NF3636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3636_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 12 - 395
Target Start/End: Original strand, 4162106 - 4162498
Alignment:
| Q |
12 |
gaatatcatgtagattaattaaagcttataaagcaaggttaacacggcaataccaaaaaggagggtcgtaagagtgaatactaaggatgatcataactga |
111 |
Q |
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| T |
4162106 |
gaatatcatgtagattaattaaagcttataaagcaaggttaacacggcaataccaaaaaagagggtcgtaagagtgaatactaaggatgatcataactga |
4162205 |
T |
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| Q |
112 |
aaaggctatattatagcttctttccctatgtgccctcatttttacttaaaacaaaaagagagactatttagtagtattatttgcttttgctaactacaaa |
211 |
Q |
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| T |
4162206 |
aaaggctatattatagcttctttccctatgtgccctcatttttacttaaaacaaaaagagagactatttagtagtattatttgcttttgctaactacaaa |
4162305 |
T |
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| Q |
212 |
gcaaaatgggaaattgatttgccaacagatgtaatcatataaaaggc---------tataacaagctgtcacatataatcgaacctttcgcttgcatcag |
302 |
Q |
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| T |
4162306 |
gcaaaatgggaaattgatttgccaacagatgcaa--acataaaaggctatacagcatataacaagctgtcacatataatcggacctttcgcttgcatcag |
4162403 |
T |
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| Q |
303 |
ttgtgac---ttatgttcgaatttctaatttgtaaactgattcaaacaaaaaggtcattcaggtactaagttggcatagataatcaaactttttgt |
395 |
Q |
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| T |
4162404 |
ttgtgactaattaggttcgaatttct-atttataaactgattcaaacaaaaaggtcatttaggtactgagttggtatagataatcaaactttttgt |
4162498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 325 - 401
Target Start/End: Original strand, 4162534 - 4162610
Alignment:
| Q |
325 |
taatttgtaaactgattcaaacaaaaaggtcattcaggtactaagttggcatagataatcaaactttttgtttgcat |
401 |
Q |
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| T |
4162534 |
taatttgtcaattgattcaaacaaaaaggtcatttaggtactgggttggcatagataatcatactttttgtttgcat |
4162610 |
T |
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