View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3636_low_15 (Length: 401)
Name: NF3636_low_15
Description: NF3636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3636_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 3612031 - 3611650
Alignment:
| Q |
1 |
agagaaggctttttatattcaatctaactgaaataaacaaaaaggatagttgctctataagtgcagcgggtttgcaaagagataactttcgatcacccaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3612031 |
agagaaggctttttatattcaatctaactgaaataaacaaaaaggatagttgctctataagtgcagcgggtttgcaaagagataactttcgatcacccaa |
3611932 |
T |
|
| Q |
101 |
aaattacagaaaatatgattctatcgacnnnnnnnnnnnnnnnnnnngcatcgaaaactatcttcctatcagtttatttcaaatgttgaacaatccatga |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3611931 |
aaattacagaaaatatgattctatcgacttttttttttgttttttt-gcatcgaaaactatcttcctatcagtttatttcaaatgttgaacaatccatga |
3611833 |
T |
|
| Q |
201 |
agcaattgtcaacaacaaaactgtattttctaaatatttatataacccatcaacactctaaaataagccttactagactcataatatttcaggaatatcc |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3611832 |
agcaattgtcaacaacaaaactgtattttttaaatatttatataacccatcaacactctaaaataagccttactagactcataatatttcaggaatatcc |
3611733 |
T |
|
| Q |
301 |
atacataaaattgtcacataaagcacattatctaatacatttttaggtacaatattatctannnnnnnaatatatgtaaaaat |
383 |
Q |
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|||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| ||||||||||||||| |
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| T |
3611732 |
atacataaaattgtcacataaaacacattatctaatatatttttaggtacaacattatctatttttttaatatatgtaaaaat |
3611650 |
T |
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