View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3636_low_17 (Length: 385)
Name: NF3636_low_17
Description: NF3636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3636_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 22 - 369
Target Start/End: Original strand, 52567332 - 52567681
Alignment:
| Q |
22 |
tgatagaatatccattttgtgaaaactcctaaaagatcttagttgaaaaatttagtggagnnnnnnnn--aagggtcggtttaacgagtcaacctattga |
119 |
Q |
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| T |
52567332 |
tgatagaatatccattttgtgaaaactcctaaaaaatcttagttgaaaaatttagtgaagttttgtttttaagggtcggtttaacgactcaacctattga |
52567431 |
T |
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| Q |
120 |
ttcataaaaattatgtgagccatatattttgatagtcatacaatacttatcaatctaatgaatgtcacatatttagccaactgactcttgaagttaaacc |
219 |
Q |
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| T |
52567432 |
ttcataaaaattatgtgagccatatgtcttgatagtcatacaacacttatcaatatgatgaatatgacatatttaaccaactggctcttgaagttaaacc |
52567531 |
T |
|
| Q |
220 |
taggtaaaagaaaaagaagtttaaaacaaattttcatatactttgaggattaaattgacgaatttcaaatactttataaactannnnnnnccgtacaata |
319 |
Q |
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| T |
52567532 |
tagataaaagaaaaagaagtttaaaacaaattttcatatactttgaggattaaattgacgaatttcaaatactttataaactatttttttccgtacaata |
52567631 |
T |
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| Q |
320 |
taaactacttaaaacttattatatctacttagtttagaaactaaattaat |
369 |
Q |
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| T |
52567632 |
taaactacttaaaacttattatatctacttagtttagaaactaaattaat |
52567681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 35624687 - 35624638
Alignment:
| Q |
112 |
cctattgattcataaaaattatgtgagccatatattttgatagtcataca |
161 |
Q |
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| T |
35624687 |
cctattgattcataaaaattatgtcagccatatgtcttgatagccataca |
35624638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 45950657 - 45950601
Alignment:
| Q |
94 |
gtcggtttaacgagtcaa-cctattgattcataaaaattatgtgagccatatatttt |
149 |
Q |
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| T |
45950657 |
gtcgttttaacgagtcaatcctattgattcaaaaaaattatgttagccatatgtttt |
45950601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 161
Target Start/End: Complemental strand, 37033508 - 37033437
Alignment:
| Q |
91 |
agggtcggtttaacgagtcaacc-tattgattcataaaaattatgtgagccatatattttgatagtcataca |
161 |
Q |
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||||||| |||||||| ||||| |||||||||| ||||||||||| || ||||||| ||||||| |||||| |
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| T |
37033508 |
agggtcgacttaacgagccaaccctattgattcacaaaaattatgtcagtcatatatcttgatagccataca |
37033437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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