View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3636_low_18 (Length: 364)
Name: NF3636_low_18
Description: NF3636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3636_low_18 |
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| [»] scaffold1030 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 35139264 - 35138919
Alignment:
| Q |
1 |
gggcttaaagagaaacgttcatatctgtctccgtgtgctagcnnnnnnnnnnnnnaacattctccattacttagagaactttttgctggtttctttttcc |
100 |
Q |
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| T |
35139264 |
gggcttaaagagaaacgttcatatctgtctccgtgtgctagctttttgattttttaacattctccattacttagagaactttttgctggtttatttttcc |
35139165 |
T |
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| Q |
101 |
catataagttttgggatcttatgtaatgtaaattttgcttttatttcaaactattgattgctgttctttattgataaaaaatatttatattgatacaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35139164 |
catataagttttgggatcttatgtaatgtaaattttgcttttatttcaaactattgattgctgttctttattgatacaaaatatttatattgatacaaaa |
35139065 |
T |
|
| Q |
201 |
ctctt-----tgtgttaggttttttcacaactcataatgtcgttggcaaaccactcagtaccaagattggtgaatcaaggggattgcaaggtttctcttt |
295 |
Q |
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| T |
35139064 |
cactttgttgtgtgttaggttttttcacaactcataatgtcattggcaaaccactcagtaccaagattggtgaatcaaggggattgcaaggtttctcttt |
35138965 |
T |
|
| Q |
296 |
tagatttacctgatgaacttgtggattgcatcctcaagtttctttc |
341 |
Q |
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| T |
35138964 |
tagatttacctgatgaacttgtggattgcatcctcaagtttctttc |
35138919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 56 - 341
Target Start/End: Complemental strand, 35131901 - 35131611
Alignment:
| Q |
56 |
aacattctccattacttagagaactttttgctggtttctttttcccatataagttttgggatcttatgtaatgtaaattttgcttttatttcaaactatt |
155 |
Q |
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| T |
35131901 |
aacattctccattacttagagaactttttgctggtttctttttcccatgtaagttttgggatattatgtaatgtaaattttgattttatttcaaactatt |
35131802 |
T |
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| Q |
156 |
gattgctgttctttattgataaaaaatatttatattgatacaaaactctt-----tgtgttaggttttttcacaactcataatgtcgttggcaaaccact |
250 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||| |||| ||||| |||| |||||||| |
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| T |
35131801 |
gatttttgttctttattgataaaaattatttatattgatacaaaacactttgttgtgtgttaggttttttcacaaatcatgatgtcattggaaaaccact |
35131702 |
T |
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| Q |
251 |
cagtaccaagattggtgaatcaaggggattgcaaggtttctcttttagatttacctgatgaacttgtggattgcatcctcaagtttctttc |
341 |
Q |
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| T |
35131701 |
cagtaccaagattgaagaatcaaggggattgcaaggtttctcttttagatttacctgatgaacttgtggattgcatcctcaagtgtctttc |
35131611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 56 - 326
Target Start/End: Complemental strand, 14278947 - 14278675
Alignment:
| Q |
56 |
aacattctccattacttagagaactttttgctggtttctttttcccatataagttttgggatcttatgtaatgtaaattttg-cttttatttcaaactat |
154 |
Q |
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|||||| ||||||||||| ||| ||||||||||||| || ||||| |||||||| |||||||||||||||||||||| |||| ||||||| ||| |
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| T |
14278947 |
aacattttccattacttatagacctttttgctggttgtttcttccctcgtaagtttttcaatcttatgtaatgtaaattttgactttcttttcaaa-tat |
14278849 |
T |
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| Q |
155 |
tgattgctgttctttattgataaaaaa-tatttatattgatacaaaactct-ttgtgttaggttttttcacaactcataatgtcgttggcaaaccactca |
252 |
Q |
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| | | |||| ||| || |||||||| ||||||||||||||||| || | |||| | ||||||| ||||| |||||||||| | |||||||||||| |
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| T |
14278848 |
taactattgttgtttgttaataaaaaattatttatattgatacaactctttgttgtttaaggttttcccacaaatcataatgtcatcagcaaaccactca |
14278749 |
T |
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| Q |
253 |
gtaccaagattggtgaatcaaggggattgcaaggtttctcttttagatttacctgatgaacttgtggattgcat |
326 |
Q |
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| T |
14278748 |
gcaccaaaattgaagaatcaaggggattgcaaggtttctcttttagatttacctgatgaaattgtacattgcat |
14278675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 66 - 327
Target Start/End: Complemental strand, 14284406 - 14284152
Alignment:
| Q |
66 |
attacttagagaactttttgctggtttctttttcccatataagttttgggatcttatgtaatgtaaattttgcttttatttcaaactattgattgctgtt |
165 |
Q |
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|||||||| ||||||||||| ||||| ||| ||||| || ||||||| ||||||||||||||||| |||| ||| || |||||||| | || |||| |
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| T |
14284406 |
attacttatagaactttttgttggttgcttcttcccttacaagttttca-atcttatgtaatgtaaaatttgactttctt--aaactattaactgttgtt |
14284310 |
T |
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| Q |
166 |
ctttattgataaaaaatatttatattgatacaaaactctttgtg---ttaggttttttcacaactcataatgtcgttggcaaaccactcagtaccaagat |
262 |
Q |
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| T |
14284309 |
gtttattatttgaaagtatttatattgatacaaaactctttgttgtcttatgtttttccacaaatcataatgtccc-------ccactcagtagcaaaat |
14284217 |
T |
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| Q |
263 |
tggtgaatcaaggggattgcaaggtttctcttttagatttacctgatgaacttgtggattgcatc |
327 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||| |
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| T |
14284216 |
tggagaatcaaggggattgcaaggtttctcttttagatttatctgatgaagttgtacattgcatc |
14284152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1030 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold1030
Description:
Target: scaffold1030; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 248
Target Start/End: Original strand, 2575 - 2760
Alignment:
| Q |
63 |
tccattacttagagaactttttgctggtttctttttcccatataagttttgggatcttatgtaatgtaaattttgcttttatttcaaactattgattgct |
162 |
Q |
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||||||||||| ||||||||||| ||||| || ||||| |||||||| |||||||||||||||||||||| ||| ||| ||||||||| || | |
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| T |
2575 |
tccattacttatagaactttttgttggttgtttcttccctcttaagtttttcgatcttatgtaatgtaaattttaactttgttttcaactattgactgtt |
2674 |
T |
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| Q |
163 |
gttctttattgat---aaaaaatatttatattgatacaaaactctttgtgttaggttttttcacaactcataatgtcgttggcaaacca |
248 |
Q |
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| T |
2675 |
gttgtttgttgataaaaaaaaatatttatattgatacaaaactcttcg---taggttttcccacagatcataatgtcatcggcaaacca |
2760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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