View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3636_low_2 (Length: 809)
Name: NF3636_low_2
Description: NF3636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3636_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 120 - 483
Target Start/End: Original strand, 52050907 - 52051285
Alignment:
| Q |
120 |
ctagctataggacaatacaaaataaccctagttaaaatattattcatgcatctgtaa-------ctttagtaatnnnnnnnnn----ttgcatgaaggga |
208 |
Q |
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| T |
52050907 |
ctagctataggacaatacaaaataaccctagttaaaatattattcatgcatctgtaagttgtaactttagtaataaaaaaaaaaaaattgcatgaaggga |
52051006 |
T |
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| Q |
209 |
g----ttgaggatannnnnnngatgccagcatttttctaaatctcagaaatagaaaaaggtcaaatattataagtgggggtggggtgtgttctgtcctga |
304 |
Q |
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| T |
52051007 |
gggagttgaggatatttttttgatgccagcatttttctaaatctgagaaatagaaaaaggtcaaatattataagtgggggtggggtgtgttctgtcctga |
52051106 |
T |
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| Q |
305 |
actgagggcagagttctgagttctgagcctgaggctgggtgaagtaaaggaacagaaaaagtaaaatgagttagtagcagtaaaagctcaaacccgtaca |
404 |
Q |
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| T |
52051107 |
actgagggcagagttctgagttctgagcctgaggctgggtgaagtaaaggaacagaaaaagtaaaatgagttagtagcagtaaaagctcaaacccgtaca |
52051206 |
T |
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| Q |
405 |
atcttacttctgatacagaggcattaccaactctcttcaaatagtttcaatatacaatcaataatactaataataacta |
483 |
Q |
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| T |
52051207 |
atcttacttctgagacagaggcattaccaactctcttcaaatagtttcaatatacaatcaataatactaataataacta |
52051285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 533 - 747
Target Start/End: Original strand, 52051335 - 52051549
Alignment:
| Q |
533 |
atggatttccgtaaatatgtcagagacaagaaatgccagagatgcagcagaagaggtgcagtcataataataagagttcagagagaaaatagaaagagaa |
632 |
Q |
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| T |
52051335 |
atggatttccgtaaatatgtcagagacaagaaatgccagagatgcagcagaagaggtgcagtcataataataagagttcagagagaaaatagaaagagaa |
52051434 |
T |
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| Q |
633 |
aaatagcattggcatgcaccaccactgtaatcacaaccattagttcatatccatgtacagaagattctgtaacactatggtccctcaaataaatatacct |
732 |
Q |
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| T |
52051435 |
aaatagcattggcatgcaccaccactgtaatcacaaccattagttcatatccatgtacagaagattctgtaacactatggtccctcaaataaatatacct |
52051534 |
T |
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| Q |
733 |
attctaattctagta |
747 |
Q |
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| T |
52051535 |
attctaattctagta |
52051549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 52050781 - 52050840
Alignment:
| Q |
18 |
attaaacatgttcaaaaatcattgttgatttgaattagaacttgcattaccttgtgttga |
77 |
Q |
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| T |
52050781 |
attaaacatgttcaaaaatcattgttgatttgaattagaacttgcattaccttgtgttga |
52050840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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