View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3636_low_20 (Length: 332)
Name: NF3636_low_20
Description: NF3636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3636_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 32 - 282
Target Start/End: Complemental strand, 38933266 - 38933027
Alignment:
| Q |
32 |
gtagtattataggtagcacgcaccttttaaattagaggaatgggttaagacagagagaagcagagaaagtgttagaaatcagaccctacaaaaagttata |
131 |
Q |
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| T |
38933266 |
gtagtattataggtagcatgcaccttttaaattagaggaatgggttaagacagagagaagcagagaaagtgttagaaatcagaccctacaaaaagttcta |
38933167 |
T |
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| Q |
132 |
cggcaaatggacaatttttccagtaatggatggatagatattagatagaggggtctaaaactacagttccttctttcttagtcggccattcataaatact |
231 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38933166 |
cggcaaatggacaatttttccagtaatgga-----------tagatagaggggtctaaaactacagttccttctttcttagtcggccattcataaatact |
38933078 |
T |
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| Q |
232 |
aggtgggtccaaaccataacaaaacaaaatatatgacataacacaaacaca |
282 |
Q |
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| T |
38933077 |
aggtgggtccaaaccataacaaaacaaaatatatgacataacacaaacaca |
38933027 |
T |
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