View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3636_low_21 (Length: 329)
Name: NF3636_low_21
Description: NF3636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3636_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 8 - 311
Target Start/End: Complemental strand, 6146464 - 6146161
Alignment:
| Q |
8 |
ggacatcatcactggtatttttaaaactagagcgtcttgttttcacggtagtcccatttcttttgatcaagttccattccaaaatgtagtgaggatctca |
107 |
Q |
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| T |
6146464 |
ggacatgatcactggtatttttaaaactagagcgtcttgttttcacggtagtcccatttgttttgatcaagttccattctaaaatgtagtgaggatctca |
6146365 |
T |
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| Q |
108 |
tcttaaatgaaatgcaataacttggtaaacaagtaatcataaattatttgatggtacatttctttttcagattttttgacaaggcagcaatagttgaaag |
207 |
Q |
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| T |
6146364 |
tcttaaatgaaatgcaataacttggtaaacaagtaatcataaattatttgatggtacatttctttttcagattttttgacaaggcagcaatagttgaaag |
6146265 |
T |
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| Q |
208 |
tgaaggaaatttagcaaaggaacaaagtccatggaaactagcaacagtcactagagttgaagaaatgaagcttatgatcaacatgatcccaatttggata |
307 |
Q |
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| T |
6146264 |
tgaaggaaatttagcaaaggaacaaagtccatggaaactagcaacagtcactagagttgaagaaatgaagcttatgatcaacatgatcccaatttggata |
6146165 |
T |
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| Q |
308 |
ttta |
311 |
Q |
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|||| |
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| T |
6146164 |
ttta |
6146161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 171 - 309
Target Start/End: Complemental strand, 23693106 - 23692968
Alignment:
| Q |
171 |
ttttcagattttttgacaaggcagcaatagttgaaagtgaaggaaatttagcaaaggaacaaagtccatggaaactagcaacagtcactagagttgaaga |
270 |
Q |
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||||||||||| ||||||||||||| ||| |||||| || ||||||| | | || | |||||||||||||| ||| |||| || |||| ||||||||| |
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| T |
23693106 |
ttttcagatttcttgacaaggcagctataattgaaaacgatggaaattcaatagagaagcaaagtccatggaagctaacaactgtaactacagttgaaga |
23693007 |
T |
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| Q |
271 |
aatgaagcttatgatcaacatgatcccaatttggatatt |
309 |
Q |
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| T |
23693006 |
aatgaagcttataatcaatatgataccaatttgggtatt |
23692968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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