View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3636_low_23 (Length: 301)
Name: NF3636_low_23
Description: NF3636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3636_low_23 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 59497 - 59627
Alignment:
| Q |
15 |
attttcatcatgtaatcagtcaggtcacgaccagccaaatcaagacgaaggatggcgtgtgggagggcataaccctcgtagatagggactgtgtggctga |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
59497 |
attttcatcatgtaatcagtcaggtcacgaccagccaaatcaagacgaaggatggcgtgtgggagggcataaccctcgtagatagggactgtgtggctga |
59596 |
T |
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| Q |
115 |
caccatcaccagaatccaacacgatacctgc |
145 |
Q |
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| T |
59597 |
caccatcaccagaatccaacacaatacctgc |
59627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 209 - 290
Target Start/End: Original strand, 59720 - 59801
Alignment:
| Q |
209 |
gttatgcctcttggttgatgagaaaattgaacaactctaaactttactaccacaaataaaggtctgtttgtgtaaaagtata |
290 |
Q |
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| T |
59720 |
gttatgcctcttggttgatgagaaaattgaacaactctaaactttactaccacaaataaaggtctgtttgtgtaaaagtata |
59801 |
T |
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Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 8689693 - 8689566
Alignment:
| Q |
18 |
ttcatcatgtaatcagtcaggtcacgaccagccaaatcaagacgaaggatggcgtgtgggagggcataaccctcgtagatagggactgtgtggctgacac |
117 |
Q |
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| T |
8689693 |
ttcatcaagaaatcggtaaggtcacgaccagccagatcaagacgaaggatggcatgtggaagggcataaccctcgtagatggggacagtgtggctgacac |
8689594 |
T |
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| Q |
118 |
catcaccagaatccaacacgatacctgc |
145 |
Q |
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| T |
8689593 |
catcaccagaatccaacacaatacctgc |
8689566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 28 - 143
Target Start/End: Original strand, 43647377 - 43647492
Alignment:
| Q |
28 |
aatcagtcaggtcacgaccagccaaatcaagacgaaggatggcgtgtgggagggcataaccctcgtagatagggactgtgtggctgacaccatcaccaga |
127 |
Q |
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| T |
43647377 |
aatcagttagatcacgaccagcaagatccaaacgaaggatggcatgtgggagtgcataaccctcatagattggcacagtgtgactcacaccgtcaccaga |
43647476 |
T |
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| Q |
128 |
atccaacacgatacct |
143 |
Q |
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| T |
43647477 |
atccaacacaatacct |
43647492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 41388275 - 41388145
Alignment:
| Q |
15 |
attttcatcatgtaatcagtcaggtcacgaccagccaaatcaagacgaaggatggcgtgtgggagggcataaccctcgtagatagggactgtgtggctga |
114 |
Q |
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|||||||||| | |||||| |||||||| || || ||||||||||||||||| || ||||| |||||||| || |||||||| || || |||||||||| |
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| T |
41388275 |
attttcatcaaggcatcagtgaggtcacgccctgctaaatcaagacgaaggatagcatgtggaagggcatatccttcgtagattggtacagtgtggctga |
41388176 |
T |
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| Q |
115 |
caccatcaccagaatccaacacgatacctgc |
145 |
Q |
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| T |
41388175 |
caccatctccagagtccagaacaatacctgc |
41388145 |
T |
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Target: scaffold0015 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 130
Target Start/End: Complemental strand, 68263 - 68196
Alignment:
| Q |
63 |
aggatggcgtgtgggagggcataaccctcgtagatagggactgtgtggctgacaccatcaccagaatc |
130 |
Q |
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| T |
68263 |
aggattgcgtgtggaagggcatatccttcatagataggaactgtgtggctgacaccatctccagaatc |
68196 |
T |
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