View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3636_low_28 (Length: 253)
Name: NF3636_low_28
Description: NF3636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3636_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 9448489 - 9448698
Alignment:
| Q |
19 |
ctaagagaaaacttaaggtaaaaataaattaaacaaaacttggaatatactctgccataattacaaattattacaaaacctctatacttataattattat |
118 |
Q |
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| T |
9448489 |
ctaagagaaaacttaaggtaaaaataaattaaagaaaacttggaatatactctgccataattacaaattattacaaaacct--atacttataattttt-- |
9448584 |
T |
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| Q |
119 |
tattttgagtaggacgagattactagaacatccctgtgaaatcaaattattacaatctcagtaactggatccgaacctctttctttcattgttcgaacta |
218 |
Q |
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| T |
9448585 |
--ttttgagtaggacgagattactagaacatccctgtgaaatcaaattattacaatctcagtaactggatccgaacctctttctttcattgttcgaacta |
9448682 |
T |
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| Q |
219 |
caaacgtaacgagacg |
234 |
Q |
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|||||||||||||||| |
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| T |
9448683 |
caaacgtaacgagacg |
9448698 |
T |
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