View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3636_low_29 (Length: 251)
Name: NF3636_low_29
Description: NF3636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3636_low_29 |
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| [»] chr7 (9 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 92 - 251
Target Start/End: Original strand, 777623 - 777793
Alignment:
| Q |
92 |
acatttaatttgcaaaatgcatttgcatgaaaattgccaaaatggttaagtgttaaactcacta------------agtatgtagttgtcttttaccttc |
179 |
Q |
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| T |
777623 |
acatttaatttgtaaaatgcatttgcatgaaaattgtcaaaacggttatatgttaacgtcactactagactcatcaagtacgtagttgtcttt-actttt |
777721 |
T |
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| Q |
180 |
gtatgtcaaatggattcctgcactaacaagtctagattgatgtttgatccttagccacaaaatagatacttt |
251 |
Q |
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| T |
777722 |
gtatgtcaaatggataggagcactaacaagtttagattgatgtttgatccttagccacaaaatagatacttt |
777793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 76 - 251
Target Start/End: Original strand, 830250 - 830412
Alignment:
| Q |
76 |
aaaatggacacaatgaacatttaatttgcaaaatgcatttgcatgaaaattgccaaaatggttaagtgttaaactcactaagtatgtagttgtcttttac |
175 |
Q |
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| T |
830250 |
aaaatggacacaatgtacatttaatttgcaaaatgcatttgcatgaaaaatgtcaaaatggtaaa-----aatgt-------tacgtagttgtcttt--a |
830335 |
T |
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| Q |
176 |
cttcgtatgtcaaatggattcctgcac-taacaagtctagattgatgtttgatccttagccacaaaatagatacttt |
251 |
Q |
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| T |
830336 |
ctttgtatgtcaaatggataggagcacttaacaagtctagattgatgtttgatccttagccacaaaaaagatacttt |
830412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 76 - 251
Target Start/End: Original strand, 1195430 - 1195592
Alignment:
| Q |
76 |
aaaatggacacaatgaacatttaatttgcaaaatgcatttgcatgaaaattgccaaaatggttaagtgttaaactcactaagtatgtagttgtcttttac |
175 |
Q |
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| T |
1195430 |
aaaatggacacaatgtacatttaatttgcaaaatgcatttgcatgaaaaatgtcaaaatggtaaa-----aatgt-------tacgtagttgtcttt--a |
1195515 |
T |
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| Q |
176 |
cttcgtatgtcaaatggattcctgcac-taacaagtctagattgatgtttgatccttagccacaaaatagatacttt |
251 |
Q |
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| T |
1195516 |
ctttgtatgtcaaatggataggagcacttaacaagtctagattgatgtttgatccttagccacaaaaaagatacttt |
1195592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 818794 - 818846
Alignment:
| Q |
80 |
tggacacaatgaacatttaatttgcaaaatgcatttgcatgaaaattgccaaa |
132 |
Q |
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| T |
818794 |
tggacacaatgtacatttaatttgcaaaatgcatttgcatgaaaaatgccaaa |
818846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 212 - 251
Target Start/End: Original strand, 788435 - 788474
Alignment:
| Q |
212 |
tagattgatgtttgatccttagccacaaaatagatacttt |
251 |
Q |
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| T |
788435 |
tagattgatgtttgatccttagccacaaaatagatacttt |
788474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 8457896 - 8457849
Alignment:
| Q |
92 |
acatttaatttgcaaaatgcatttgcatgaaaattgccaaaatggtta |
139 |
Q |
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| T |
8457896 |
acatttaatctgtaaaatgcatttgcatgaaaattgccaaaatggtta |
8457849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 818862 - 818950
Alignment:
| Q |
161 |
gtagttgtcttttaccttcgtatgtcaaatggattcctgcact-aacaagtct-agattgatgtttgatccttagccacaaaatagatact |
249 |
Q |
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| T |
818862 |
gtagttgtcttta--ctttgtatgtcaaatggataggagcacttaacaagtcttagattgatgtttgatcctcagccacaaaatagatact |
818950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 776725 - 776763
Alignment:
| Q |
19 |
tcatgaggggatcacttgccatcaatagattctagcctt |
57 |
Q |
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| T |
776725 |
tcatgaggggatcacttgtcatcaatagattctatcctt |
776763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 8458623 - 8458585
Alignment:
| Q |
19 |
tcatgaggggatcacttgccatcaatagattctagcctt |
57 |
Q |
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| T |
8458623 |
tcatgaggggatcacttgtcatcaatagattctatcctt |
8458585 |
T |
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