View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3636_low_30 (Length: 251)
Name: NF3636_low_30
Description: NF3636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3636_low_30 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 251
Target Start/End: Complemental strand, 788845 - 788614
Alignment:
| Q |
22 |
aaaaacaaataaatgattttgattgttcgtgtattatgtgtttatgtctttttctatcacatgttagagctcattctctttcatgtctttctattccttt |
121 |
Q |
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| T |
788845 |
aaaaacaaataaatgattttgattgttcgtgtattatgtgtttatgtctttttctatcacatgttagagttcattctctttcatgtctttctcttccttt |
788746 |
T |
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| Q |
122 |
tctatctatttctctt--acacctctcaaataattctaaaatgaagtataagaattgagacaatcattatcacctaccctatcgaattctatggttgaaa |
219 |
Q |
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| T |
788745 |
tccatctatacctcttttacacctctcaaataattctaaaatgaagtataagaattgagacaatcattatctcctaccctatcgaattctatggttgaaa |
788646 |
T |
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| Q |
220 |
gaccaaatcaaaaactaaatttgtagatagcc |
251 |
Q |
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| T |
788645 |
gaccaaatcaaaaactaaatttgtagatagcc |
788614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 56 - 251
Target Start/End: Complemental strand, 778130 - 777933
Alignment:
| Q |
56 |
tatgtgtttatgtctttttctatcacatgttagagctcattctctttcatgtctttctattccttttctatctatttctctt--acacctctcaaataat |
153 |
Q |
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| T |
778130 |
tatgtgtttatgtctttttctatcacatgttagagttcattctctttcatgtctttctcttccttttccatctatacctcttttacacctctcaaataat |
778031 |
T |
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| Q |
154 |
tctaaaatgaagtataagaattgagacaatcattatcacctaccctatcgaattctatggttgaaagaccaaatcaaaaactaaatttgtagatagcc |
251 |
Q |
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| T |
778030 |
tctaaaatgaagtataagaattgagacaatcattatctcctaccctatcgaattctatggttgaaagaccaaatcaaaaactaaatttgtagatagcc |
777933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 69 - 251
Target Start/End: Complemental strand, 830744 - 830563
Alignment:
| Q |
69 |
ctttttctatcacatgttagagctcattctctttcatgtctttctattccttttctatctatttctcttacacctctcaaataattctaaaatgaagtat |
168 |
Q |
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| T |
830744 |
ctttttctatcacatggtaca-cttattctctttaacgtatctctcttccttttccatctatctctcttacacctctcaaataattctaaaatgaagtat |
830646 |
T |
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| Q |
169 |
aagaattgagacaatcattatcacctaccctatcgaattctatggttgaaagaccaaatcaaaaactaaatttgtagatagcc |
251 |
Q |
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| T |
830645 |
aagagttgagacgatcattatctcctttcctatcaaattctatggttgaaagaccaaatcaaaaactaaatttgtagatagcc |
830563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 69 - 251
Target Start/End: Complemental strand, 1195924 - 1195743
Alignment:
| Q |
69 |
ctttttctatcacatgttagagctcattctctttcatgtctttctattccttttctatctatttctcttacacctctcaaataattctaaaatgaagtat |
168 |
Q |
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| T |
1195924 |
ctttttctatcacatggtaca-cttattctctttaacgtatctctcttccttttccatctatctctcttacacctctcaaataattctaaaatgaagtat |
1195826 |
T |
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| Q |
169 |
aagaattgagacaatcattatcacctaccctatcgaattctatggttgaaagaccaaatcaaaaactaaatttgtagatagcc |
251 |
Q |
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| T |
1195825 |
aagagttgagacgatcattatctcctttcctatcaaattctatggttgaaagaccaaatcaaaaactaaatttgtagatagcc |
1195743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 68 - 251
Target Start/End: Complemental strand, 8456654 - 8456470
Alignment:
| Q |
68 |
tctttttctatcacatgttagagctcattctctttcatgtctttctattcctttt-ctatctatt--tctcttacacctctcaaataattctaaaatgaa |
164 |
Q |
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| T |
8456654 |
tctttttccatcgcatgttaca-cttattctctttcacgtctttctcttcctttttccatctatacctctcttacacctctcaaataattctaaaatgaa |
8456556 |
T |
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| Q |
165 |
gtataagaattgagacaatcattatcacctaccctatcgaattctatggttgaaagaccaaatcaaaaactaaatttgtagatagcc |
251 |
Q |
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| T |
8456555 |
gtataagaatttagacaatcattgtctcctatcctatcaaattctatggttg-aataccaaatcaaaaactaaaattgtagatagcc |
8456470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 98 - 251
Target Start/End: Complemental strand, 819253 - 819099
Alignment:
| Q |
98 |
tctttcatgtctttctattccttttctatctatttctctt--acacctctcaaataattctaaaatgaagtataagaattgagacaatcattatcaccta |
195 |
Q |
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| T |
819253 |
tctttcacatctttctcttccttttccatctatacctcttttacacctctcaaataattctaacatgaagtataagaatttagacaatcattatctccta |
819154 |
T |
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| Q |
196 |
ccctatcgaattctatggttgaaagaccaaatcaaaaactaaatttgtagatagcc |
251 |
Q |
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| T |
819153 |
tcctatcaaattctatggttg-cataccaaatcaaaaactaaatttgtagatagcc |
819099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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