View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3636_low_31 (Length: 250)
Name: NF3636_low_31
Description: NF3636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3636_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 240
Target Start/End: Original strand, 34254043 - 34254269
Alignment:
| Q |
14 |
gttgccaacattcttcttattgattctcctgttggagttggattttcatattcaaatgcttcttctgatattctcaacaatggagataagaggacaggta |
113 |
Q |
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| T |
34254043 |
gttgccaacattcttcttattgattctcctgttggagttggattttcatattcaaatgcttcttctgatattctcaacaatggagataagaggacaagta |
34254142 |
T |
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| Q |
114 |
agaagatattacttaatgggatatggattccctacatttacaaatatacgcggctgcatgcattaattgatctcagctattgatttgataccttaattaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34254143 |
agaagatattacttaatgggatatggattccctacatttacaaatatacgcggctgcatgcattaattgatctcagctattgatttgataccttaattaa |
34254242 |
T |
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| Q |
214 |
atcatctttaaacagtcttcacctttg |
240 |
Q |
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||||||||||||||||||||||||||| |
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| T |
34254243 |
atcatctttaaacagtcttcacctttg |
34254269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 26634173 - 26634250
Alignment:
| Q |
38 |
tctcctgttggagttggattttcatattcaaatgcttcttctgatattctcaacaatggagataagaggacaggtaag |
115 |
Q |
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| T |
26634173 |
tctcctgttggagttggattttcatattcaaagaattcatctgacattctcaacaatggcgataagaggacaggtaag |
26634250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 26626596 - 26626696
Alignment:
| Q |
14 |
gttgccaacattcttcttattgattctcctgttggagttggattttcatattcaaatgcttcttctgatattctcaacaatggagataagaggacaggta |
113 |
Q |
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| T |
26626596 |
gttgccaacattctttatattgactcgcctgtcggagttggattttcctattcaaagaattcatctgacattctcaccaatggcgataagaggacaggta |
26626695 |
T |
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| Q |
114 |
a |
114 |
Q |
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| T |
26626696 |
a |
26626696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 26641616 - 26641723
Alignment:
| Q |
14 |
gttgccaacattcttcttattgattctcctgttggagttggattttcatattca------aatgcttcttctgatattctcaacaatggagataagagga |
107 |
Q |
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|||||||| |||||| |||||| |||||||||||||||||||||||||||||| ||| | ||| ||| |||||||||||||| |||||||||| |
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| T |
26641616 |
gttgccaatattctttatattgactctcctgttggagttggattttcatattcaacaaagaattcatctgatgacattctcaacaatggcgataagagga |
26641715 |
T |
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| Q |
108 |
caggtaag |
115 |
Q |
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|||||||| |
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| T |
26641716 |
caggtaag |
26641723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 3332885 - 3332917
Alignment:
| Q |
38 |
tctcctgttggagttggattttcatattcaaat |
70 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
3332885 |
tctcctgttggagttggattttcttattcaaat |
3332917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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