View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3636_low_34 (Length: 244)
Name: NF3636_low_34
Description: NF3636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3636_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 60 - 227
Target Start/End: Complemental strand, 32911397 - 32911230
Alignment:
| Q |
60 |
atggaaacttcaggtgatcctccaaaaaatctttaacgtgctcatttattccttttagggtgcgtctctatttttgtgggtaataacgacaaaaaaggaa |
159 |
Q |
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| T |
32911397 |
atggaaacttcaggtgatcctccaaaaaatatttaacgtgctcattgattccttttagggtgcgtctctatttttgtgggtaataacgacaaaaaaggaa |
32911298 |
T |
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| Q |
160 |
aatttgaaacctctaattagacgacacgtcgaccaacagattaaagaaataaaagtaggaataaaaaa |
227 |
Q |
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| T |
32911297 |
aatttgaaacctctaaatggacgacacgtcgaccaacagattaaagaaataacagtaggaataaaaaa |
32911230 |
T |
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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 32911443 - 32911409
Alignment:
| Q |
2 |
tatttatggcattttttgtcaaattaatgtatata |
36 |
Q |
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| T |
32911443 |
tatttatggcattttttgtcaaattaatgtttata |
32911409 |
T |
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