View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3636_low_35 (Length: 239)

Name: NF3636_low_35
Description: NF3636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3636_low_35
NF3636_low_35
[»] chr3 (2 HSPs)
chr3 (177-223)||(17571460-17571506)
chr3 (52-96)||(14903164-14903208)
[»] chr6 (2 HSPs)
chr6 (52-96)||(18860055-18860099)
chr6 (52-96)||(16477095-16477139)
[»] chr4 (18 HSPs)
chr4 (52-96)||(12180830-12180874)
chr4 (52-96)||(12174134-12174178)
chr4 (52-96)||(12178929-12178973)
chr4 (52-96)||(12180492-12180536)
chr4 (52-96)||(12182066-12182110)
chr4 (52-96)||(12184313-12184357)
chr4 (52-96)||(12184633-12184677)
chr4 (52-96)||(12189648-12189692)
chr4 (66-96)||(12169186-12169216)
chr4 (66-96)||(12172473-12172503)
chr4 (67-96)||(12173140-12173169)
chr4 (52-93)||(12173793-12173834)
chr4 (67-96)||(12183984-12184013)
chr4 (52-96)||(12182409-12182453)
chr4 (52-96)||(12186624-12186668)
chr4 (52-96)||(12188618-12188662)
chr4 (52-96)||(12188961-12189005)
chr4 (52-96)||(12189304-12189348)
[»] chr2 (35 HSPs)
chr2 (52-97)||(24626307-24626352)
chr2 (52-96)||(24621702-24621746)
chr2 (52-96)||(24622021-24622065)
chr2 (52-96)||(24622340-24622384)
chr2 (52-96)||(24622624-24622668)
chr2 (52-96)||(24622908-24622952)
chr2 (52-96)||(24623511-24623555)
chr2 (52-96)||(24623830-24623874)
chr2 (52-96)||(24624423-24624467)
chr2 (52-96)||(24624742-24624786)
chr2 (52-96)||(24625026-24625070)
chr2 (52-96)||(24625345-24625389)
chr2 (52-96)||(24626918-24626962)
chr2 (52-96)||(24631404-24631448)
chr2 (52-96)||(24631723-24631767)
chr2 (52-96)||(24632007-24632051)
chr2 (52-96)||(24632291-24632335)
chr2 (52-96)||(24632610-24632654)
chr2 (52-96)||(24632894-24632938)
chr2 (52-96)||(24633178-24633222)
chr2 (52-96)||(24633497-24633541)
chr2 (52-96)||(24633816-24633860)
chr2 (52-96)||(24634100-24634144)
chr2 (52-96)||(24634703-24634747)
chr2 (52-96)||(24638782-24638826)
chr2 (52-96)||(24639101-24639145)
chr2 (66-97)||(24637860-24637891)
chr2 (66-96)||(24626001-24626031)
chr2 (66-96)||(24627535-24627565)
chr2 (67-96)||(3348084-3348113)
chr2 (52-96)||(24623227-24623271)
chr2 (52-96)||(24627237-24627281)
chr2 (52-96)||(24631120-24631164)
chr2 (52-96)||(24634419-24634463)
chr2 (52-96)||(24638463-24638507)
[»] chr1 (1 HSPs)
chr1 (52-97)||(2557899-2557944)
[»] chr5 (1 HSPs)
chr5 (52-96)||(21825771-21825815)
[»] scaffold1024 (1 HSPs)
scaffold1024 (66-96)||(59-89)
[»] chr8 (1 HSPs)
chr8 (52-94)||(15246346-15246388)


Alignment Details
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 17571460 - 17571506
Alignment:
Q  177 ataaaattcaatctgaatccaagtgtgttcgttgtcaatatttactt 223  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  17571460 ataaaattcaatttgaatccaagtgtgttcgttgtcaatatttactt 17571506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 14903208 - 14903164
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  14903208 acacaaggacttttcaggaggtcacccatcctagtactactctcg 14903164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 18860099 - 18860055
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||    
T  18860099 acacaaggactttccaggaggtcacccatcctagtactactctcg 18860055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 16477095 - 16477139
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  16477095 acacaaggacttcccaggaggtcacccatcctagtactactctcg 16477139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 12180830 - 12180874
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||    
T  12180830 acacaaggactttccaggaggtcacccatcctagtactactctcg 12180874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 12174134 - 12174178
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||| |||||||||| ||||||||||||||||||||    
T  12174134 acacaaggactttccaggaggtcatccatcctagtactactctcg 12174178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 12178929 - 12178973
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  12178929 acacaaggacttcccaggaggtcacccatcctagtactactctcg 12178973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 12180492 - 12180536
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  12180492 acacaaggacttcccaggaggtcacccatcctagtactactctcg 12180536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 12182066 - 12182110
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  12182066 acacaaggacttcccaggaggtcacccatcctagtactactctcg 12182110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 12184313 - 12184357
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  12184313 acacaaggacttcccaggaggtcacccatcctagtactactctcg 12184357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 12184633 - 12184677
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||| |||||||||||||||||| ||||||||||||    
T  12184633 acacaaggactttccaggaggtcacccatcctggtactactctcg 12184677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 12189648 - 12189692
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  12189648 acacaaggacttcccaggaggtcacccatcctagtactactctcg 12189692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 96
Target Start/End: Original strand, 12169186 - 12169216
Alignment:
Q  66 caggaggtcacccatcctagtactactctcg 96  Q
    |||||||||||||||||||||||||||||||    
T  12169186 caggaggtcacccatcctagtactactctcg 12169216  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 96
Target Start/End: Original strand, 12172473 - 12172503
Alignment:
Q  66 caggaggtcacccatcctagtactactctcg 96  Q
    |||||||||||||||||||||||||||||||    
T  12172473 caggaggtcacccatcctagtactactctcg 12172503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 96
Target Start/End: Original strand, 12173140 - 12173169
Alignment:
Q  67 aggaggtcacccatcctagtactactctcg 96  Q
    ||||||||||||||||||||||||||||||    
T  12173140 aggaggtcacccatcctagtactactctcg 12173169  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 12173793 - 12173834
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactc 93  Q
    ||||||| ||||| |||||||||| |||||||||||||||||    
T  12173793 acacaaggactttccaggaggtcatccatcctagtactactc 12173834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 96
Target Start/End: Original strand, 12183984 - 12184013
Alignment:
Q  67 aggaggtcacccatcctagtactactctcg 96  Q
    ||||||||||||||||||||||||||||||    
T  12183984 aggaggtcacccatcctagtactactctcg 12184013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 12182409 - 12182453
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  ||||||||||||||||||||| |||||||||    
T  12182409 acacaaggacttcccaggaggtcacccatcctagtcctactctcg 12182453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 12186624 - 12186668
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| |||| |||||||| |||||||||| ||||||||||||    
T  12186624 acacaaggacttctcaggaggacacccatcctcgtactactctcg 12186668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 12188618 - 12188662
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| |||| |||||||| |||||||||| ||||||||||||    
T  12188618 acacaaggacttctcaggaggacacccatcctcgtactactctcg 12188662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 12188961 - 12189005
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||| ||||||||||    
T  12188961 acacaagaacttcccaggaggtcacccatcctagaactactctcg 12189005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 12189304 - 12189348
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||| ||||||||||||||||||||    
T  12189304 acacaaggacttcccaggaggtcatccatcctagtactactctcg 12189348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 24626307 - 24626352
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcgg 97  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||    
T  24626307 acacaaggacttcccaggaggtcacccatcctagtactactctcgg 24626352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 24621702 - 24621746
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  24621702 acacaaggacttcccaggaggtcacccatcctagtactactctcg 24621746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 24622021 - 24622065
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  24622021 acacaaggacttcccaggaggtcacccatcctagtactactctcg 24622065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 24622340 - 24622384
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  24622340 acacaaggacttcccaggaggtcacccatcctagtactactctcg 24622384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 24622624 - 24622668
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  24622624 acacaaggacttcccaggaggtcacccatcctagtactactctcg 24622668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 24622908 - 24622952
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  24622908 acacaaggacttcccaggaggtcacccatcctagtactactctcg 24622952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 24623511 - 24623555
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  24623511 acacaaggacttcccaggaggtcacccatcctagtactactctcg 24623555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 24623830 - 24623874
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  24623830 acacaaggacttcccaggaggtcacccatcctagtactactctcg 24623874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 24624423 - 24624467
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  24624423 acacaaggacttcccaggaggtcacccatcctagtactactctcg 24624467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 24624742 - 24624786
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  24624742 acacaaggacttcccaggaggtcacccatcctagtactactctcg 24624786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 24625026 - 24625070
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  24625026 acacaaggacttcccaggaggtcacccatcctagtactactctcg 24625070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 24625345 - 24625389
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  24625345 acacaaggacttcccaggaggtcacccatcctagtactactctcg 24625389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 24626918 - 24626962
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  24626918 acacaaggacttcccaggaggtcacccatcctagtactactctcg 24626962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 24631404 - 24631448
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  24631404 acacaaggacttcccaggaggtcacccatcctagtactactctcg 24631448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 24631723 - 24631767
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  24631723 acacaaggacttcccaggaggtcacccatcctagtactactctcg 24631767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 24632007 - 24632051
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  24632007 acacaaggacttcccaggaggtcacccatcctagtactactctcg 24632051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 24632291 - 24632335
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  24632291 acacaaggacttcccaggaggtcacccatcctagtactactctcg 24632335  T

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Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 24632610 - 24632654
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  24632610 acacaaggacttcccaggaggtcacccatcctagtactactctcg 24632654  T

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Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 24632894 - 24632938
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  24632894 acacaaggacttcccaggaggtcacccatcctagtactactctcg 24632938  T

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Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 24633178 - 24633222
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  24633178 acacaaggacttcccaggaggtcacccatcctagtactactctcg 24633222  T

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Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 24633497 - 24633541
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  24633497 acacaaggacttcccaggaggtcacccatcctagtactactctcg 24633541  T

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Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 24633816 - 24633860
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  24633816 acacaaggacttcccaggaggtcacccatcctagtactactctcg 24633860  T

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Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 24634100 - 24634144
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  24634100 acacaaggacttcccaggaggtcacccatcctagtactactctcg 24634144  T

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Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 24634703 - 24634747
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  24634703 acacaaggacttcccaggaggtcacccatcctagtactactctcg 24634747  T

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Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 24638782 - 24638826
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  24638782 acacaaggacttcccaggaggtcacccatcctagtactactctcg 24638826  T

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Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 24639101 - 24639145
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  24639101 acacaaggacttcccaggaggtcacccatcctagtactactctcg 24639145  T

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Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 97
Target Start/End: Original strand, 24637860 - 24637891
Alignment:
Q  66 caggaggtcacccatcctagtactactctcgg 97  Q
    ||||||||||||||||||||||||||||||||    
T  24637860 caggaggtcacccatcctagtactactctcgg 24637891  T

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Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 96
Target Start/End: Original strand, 24626001 - 24626031
Alignment:
Q  66 caggaggtcacccatcctagtactactctcg 96  Q
    |||||||||||||||||||||||||||||||    
T  24626001 caggaggtcacccatcctagtactactctcg 24626031  T

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Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 96
Target Start/End: Original strand, 24627535 - 24627565
Alignment:
Q  66 caggaggtcacccatcctagtactactctcg 96  Q
    |||||||||||||||||||||||||||||||    
T  24627535 caggaggtcacccatcctagtactactctcg 24627565  T

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Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 96
Target Start/End: Original strand, 3348084 - 3348113
Alignment:
Q  67 aggaggtcacccatcctagtactactctcg 96  Q
    ||||||||||||||||||||||||||||||    
T  3348084 aggaggtcacccatcctagtactactctcg 3348113  T

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Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 24623227 - 24623271
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||| ||||||||||    
T  24623227 acacaaggacttcccaggaggtcacccatcctagnactactctcg 24623271  T

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Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 24627237 - 24627281
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||| ||||||||||    
T  24627237 acacaaggacttcccaggaggtcacccatcctagnactactctcg 24627281  T

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Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 24631120 - 24631164
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  || ||||||||||||||||||||||||||||    
T  24631120 acacaaggacttcccangaggtcacccatcctagtactactctcg 24631164  T

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Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 24634419 - 24634463
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||| ||||||||||    
T  24634419 acacaaggacttcccaggaggtcacccatcctagcactactctcg 24634463  T

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Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 24638463 - 24638507
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||| ||||||||||    
T  24638463 acacaaggacttcccaggaggtcacccatcctagcactactctcg 24638507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 2557944 - 2557899
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcgg 97  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||    
T  2557944 acacaaggacttcccaggaggtcacccatcctagtactactctcgg 2557899  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 21825815 - 21825771
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactctcg 96  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||    
T  21825815 acacaaggacttcccaggaggtcacccatcctagtactactctcg 21825771  T

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Target: scaffold1024 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1024
Description:

Target: scaffold1024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 96
Target Start/End: Complemental strand, 89 - 59
Alignment:
Q  66 caggaggtcacccatcctagtactactctcg 96  Q
    |||||||||||||||||||||||||||||||    
T  89 caggaggtcacccatcctagtactactctcg 59  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 15246346 - 15246388
Alignment:
Q  52 acacaagtacttttcaggaggtcacccatcctagtactactct 94  Q
    ||||||| |||||||||||||||||| ||||||||||| ||||    
T  15246346 acacaaggacttttcaggaggtcacctatcctagtactgctct 15246388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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