View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3636_low_4 (Length: 709)
Name: NF3636_low_4
Description: NF3636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3636_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 11 - 477
Target Start/End: Complemental strand, 6201320 - 6200853
Alignment:
| Q |
11 |
cacagaggcacacaatgatgcaagatcaaagcatgaagtctctcttgttacgtattgcagcattagaacccagctccacgatccactgtccattcctctc |
110 |
Q |
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| T |
6201320 |
cacagaggcacacaatgatgcaagatcaaagcatgaagtctctcttgttacgtattgcatcattagaacccagctccacgatccactgtccattcctctc |
6201221 |
T |
|
| Q |
111 |
ttccctccttaacaaatgtcttctacgagttttcaaattccctacccaccctccttatgactcggttagaaataactctttctttattttcttttgttta |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6201220 |
ttccctccttaacaaatgtcttctacgagttttcaaattccctacccaccctccttatgactcggttagaaataactctttctttatttacttttgttta |
6201121 |
T |
|
| Q |
211 |
tgtcaatatatttgaatctattaat-aaatctaacaagtttttattattttaattttgtatgtagatgataaagaaagcagtgaaggaattgaatgagaa |
309 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6201120 |
tgtcaatatatttgaatctattaataaaacctaacaagtttttattattttaattttgtatgtagatgataaagagagcagtgaaggaattgaatgagaa |
6201021 |
T |
|
| Q |
310 |
aagtggctcaaccgaggaagatatctccaagttcattagaagggaatatgataatgatttgccatttgatcatgcatctattcttcatagtcgtcttaag |
409 |
Q |
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| T |
6201020 |
aagtggctcaaccgaggaagatatctccaagttcatcagaagggaatatgataatgatttgccatttgatcacgcgtttattcttcatagtcgtcttaag |
6200921 |
T |
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| Q |
410 |
aagttttgcatgagtggagaacttttgtgtactgagaatggcaaatatgtgtttgttgattgtgaaag |
477 |
Q |
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| T |
6200920 |
aagttttgcatgagtggagaacttttgtgtaccgagaatggcaaatatgtgtttgttgattgtgaaag |
6200853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 544 - 695
Target Start/End: Complemental strand, 6200801 - 6200650
Alignment:
| Q |
544 |
tactaacaatgtaaattattttcacactatcatcaaataaaaagccatgtatccgttgtgtcattttaaatcaatttaagttaattaaaataacaaataa |
643 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6200801 |
tactaacaatgtaaattattttcacactatcatcaaataaaaagccatgtatccgttgtgtcattttaaatcaatttaagttaattaaaataacaaataa |
6200702 |
T |
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| Q |
644 |
ctgtctaatatcactcacaatttgtttgttttcttcctcacatttatatatg |
695 |
Q |
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| T |
6200701 |
ctgtctaatatcactcacaatttgtttgttttcttcctcacatttatatatg |
6200650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 14 - 477
Target Start/End: Complemental strand, 43367613 - 43367144
Alignment:
| Q |
14 |
agaggcacacaatgatgcaagatcaaagcatgaagtctctcttgttacgtattgcagcattagaacccagctccacgatccactgtccattcctctcttc |
113 |
Q |
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|||||||||| ||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||| || |
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| T |
43367613 |
agaggcacaccatgctgcaagatcaaaggatgaagtctctcttgttgcgtattgcagcattagaacccagctacacgatccactgtccactcctctcctc |
43367514 |
T |
|
| Q |
114 |
cctccttaacaaatgtcttctacgagttttcaaattccctacccaccctccttatgactcggttagaaa-taactctttctttattttcttttgtttatg |
212 |
Q |
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| T |
43367513 |
cctcgttaaccattgtcttcaacgaattttcaaatcccccactcaccctccttatgactcggttagaaactaactctttctttattttcttttgtttatg |
43367414 |
T |
|
| Q |
213 |
tcaatatatttgaatctattaataaatc------taacaagtttttattattttaattttgtatgtagatgataaagaaagcagtgaaggaattgaatga |
306 |
Q |
| |
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||||| |||||||| ||| |||||| | | |||||||||| | |||| || || |||||||||||||| ||| ||||||| ||| |||| |
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| T |
43367413 |
tcaattgatttgaatttataaataaaacctctcatcacaagttttt-tattttttgttaattacgtagatgataaagagagcgatgaaggagttggatga |
43367315 |
T |
|
| Q |
307 |
gaaaagtggctcaaccgaggaagatatctccaagttcattagaagggaatatgataatgatttgccatttgatcatgcatctattcttcatagtcgtctt |
406 |
Q |
| |
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||||||||||| || ||||||| |||||| |||| ||||||||| |||||||||| ||||| || ||||||||||||||||||||||||| || |||| |
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| T |
43367314 |
gaaaagtggcttgactgaggaagcaatctccgagtttattagaaggcaatatgataaagatttaccgtttgatcatgcatctattcttcatattcatctt |
43367215 |
T |
|
| Q |
407 |
aagaagttttgcatgagtggagaacttttgtgtactgagaatggcaaatatgtgtttgttgattgtgaaag |
477 |
Q |
| |
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| T |
43367214 |
cagaagctttgcatgagtggagaacttttgtgcaccgagaatgagaaatatgtgtttgctgattgtgaaag |
43367144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 545 - 684
Target Start/End: Complemental strand, 43366745 - 43366605
Alignment:
| Q |
545 |
actaacaatgtaaattattttcacactatcatcaaataaaaagccatgtatccgttgtgtcattttaaatcaatttaagttaatt-aaaataacaaataa |
643 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |||||| || | |||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
43366745 |
actaacaatgtaaaatattttcacactatcatcaaataaaaaaccatgtttctgccatgtcattttaaatcaatttaagttaatttaaaataataaataa |
43366646 |
T |
|
| Q |
644 |
ctgtctaatatcactcacaatttgtttgttttcttcctcac |
684 |
Q |
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|||| ||||||||||||||| |||||||| ||||||||||| |
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| T |
43366645 |
ctgtttaatatcactcacaaattgtttgtcttcttcctcac |
43366605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 579 - 686
Target Start/End: Original strand, 7527364 - 7527472
Alignment:
| Q |
579 |
aataaaaagccatgtatccgttgtgtcattttaaatcaatttaagttaatt-aaaataacaaataactgtctaatatcactcacaatttgtttgttttct |
677 |
Q |
| |
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|||||||| |||||| |||| |||||||||||||||||||||||||||| ||||||| |||| ||||| |||||||||||||||||||||||| |||| |
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| T |
7527364 |
aataaaaaaccatgtttccgccatgtcattttaaatcaatttaagttaatttaaaataataaatgactgtttaatatcactcacaatttgtttgtcttct |
7527463 |
T |
|
| Q |
678 |
tcctcacat |
686 |
Q |
| |
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||||||||| |
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| T |
7527464 |
tcctcacat |
7527472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 264 - 360
Target Start/End: Complemental strand, 18840798 - 18840702
Alignment:
| Q |
264 |
tttgtatgtagatgataaagaaagcagtgaaggaattgaatgagaaaagtggctcaaccgaggaagatatctccaagttcattagaagggaatatga |
360 |
Q |
| |
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||||| ||||||||||||| |||||| | ||||| |||||||| || ||||||| || |||| || ||||| | |||||||||||||||||||| |
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| T |
18840798 |
tttgtgtgtagatgataaacaaagcaatcaaggagttgaatgacgaatgtggctcgactgaggcagcaatctctgaattcattagaagggaatatga |
18840702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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