View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3636_low_5 (Length: 609)

Name: NF3636_low_5
Description: NF3636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3636_low_5
NF3636_low_5
[»] chr7 (3 HSPs)
chr7 (188-599)||(38633049-38633465)
chr7 (19-136)||(38633517-38633634)
chr7 (19-74)||(38635326-38635381)
[»] chr1 (10 HSPs)
chr1 (23-73)||(35203181-35203231)
chr1 (23-73)||(45526202-45526252)
chr1 (23-73)||(8640315-8640365)
chr1 (23-73)||(35206425-35206475)
chr1 (23-73)||(35216972-35217022)
chr1 (23-73)||(35222789-35222839)
chr1 (23-73)||(35476995-35477045)
chr1 (292-351)||(35202996-35203054)
chr1 (23-73)||(35192841-35192891)
chr1 (23-72)||(35265360-35265409)
[»] chr2 (1 HSPs)
chr2 (29-74)||(33137662-33137707)


Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 188 - 599
Target Start/End: Complemental strand, 38633465 - 38633049
Alignment:
Q  188 gtgtacatggctatgaagcacatacacgacacaaaacacgacgtcgacatgaaaacgaggagtgtctttgtttcataggttaatagttaatacagttatt 287  Q
    |||||||| ||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38633465 gtgtacatagctatgaagcacagacacgacacaaaacacgacatcaacatgaaaacgaggagtgtctttgtttcataggttaatagttaatacagttatt 38633366  T
Q  288 aatccacccaatatgtcttcactaatttaattaactcttaagtaaacagttatctacaactttaattatgaatactaaatatgtgaatcaccaaagagca 387  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38633365 aatccacccaatatgtcttcactaattta-ttaactcttaagtaaacagttatctacaactttaattatgaatactaaatatgtgaatcaccaaagagca 38633267  T
Q  388 cttgaatgagatgcttaaggtccaaggtttgaatagaaccctgaaaatgcagcgcaatagtgctaaatctcttgtggaaagtggttctatctgactcgag 487  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38633266 cttgaatgagatgcttaaggtccaaggttcgaatagaaccctgaaaatgcagcgcaatagtgctaaatctcttgtggaaagtggttctatctgactcgag 38633167  T
Q  488 agatttaatatgcgcagttgtgcatagaggatatccgattcac------nnnnnnnnnntacaatcacactcggtacttttcagtttatgttctgttact 581  Q
    |||||||||||| ||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||||||||    
T  38633166 agatttaatatgtgcagttgtgcatagaggatatccgattcacaaaaaaaaaaaaaaaatacaatcacactcggtacttttcagtttatgttctgttact 38633067  T
Q  582 cattttctggttcctttg 599  Q
    ||||||||||||||||||    
T  38633066 cattttctggttcctttg 38633049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 38633634 - 38633517
Alignment:
Q  19 ttatttggatagaaagagtggaaaaaagtgttgcatccttgctgctaaatctctcagctttgatagataccgacgcttcattgttactactatacatgat 118  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38633634 ttatttagatagaaagagtggaaaaaagtgttgcatccttgctgctaaatctctcagcattgatagataccgacgcttcattgttactactatacatgat 38633535  T
Q  119 tccaggtttgctcttaac 136  Q
    ||||||||||||||||||    
T  38633534 tccaggtttgctcttaac 38633517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 38635381 - 38635326
Alignment:
Q  19 ttatttggatagaaagagtggaaaaaagtgttgcatccttgctgctaaatctctca 74  Q
    |||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  38635381 ttatttagatagaaagagtggaaaaaagtgttacattcttgctgctaaatctctca 38635326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 35203231 - 35203181
Alignment:
Q  23 ttggatagaaagagtggaaaaaagtgttgcatccttgctgctaaatctctc 73  Q
    |||||||||||||||||||||||||||| ||| |||||||||| |||||||    
T  35203231 ttggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 35203181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 45526252 - 45526202
Alignment:
Q  23 ttggatagaaagagtggaaaaaagtgttgcatccttgctgctaaatctctc 73  Q
    |||||||||||||||||||||||||||| ||| |||||||||| |||||||    
T  45526252 ttggatagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 45526202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 8640365 - 8640315
Alignment:
Q  23 ttggatagaaagagtggaaaaaagtgttgcatccttgctgctaaatctctc 73  Q
    ||||| |||||||||||||||||||||| ||| |||||||||| |||||||    
T  8640365 ttggacagaaagagtggaaaaaagtgttacatgcttgctgctagatctctc 8640315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 35206475 - 35206425
Alignment:
Q  23 ttggatagaaagagtggaaaaaagtgttgcatccttgctgctaaatctctc 73  Q
    |||||||||||||||||||||||||||| ||| ||| |||||| |||||||    
T  35206475 ttggatagaaagagtggaaaaaagtgttacatgctttctgctagatctctc 35206425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 35217022 - 35216972
Alignment:
Q  23 ttggatagaaagagtggaaaaaagtgttgcatccttgctgctaaatctctc 73  Q
    |||||||||||||||||||||||||||| ||| ||| |||||| |||||||    
T  35217022 ttggatagaaagagtggaaaaaagtgttacatgctttctgctagatctctc 35216972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 35222839 - 35222789
Alignment:
Q  23 ttggatagaaagagtggaaaaaagtgttgcatccttgctgctaaatctctc 73  Q
    |||||||||||||||||||||||||||  ||| |||||||||| |||||||    
T  35222839 ttggatagaaagagtggaaaaaagtgtgtcatgcttgctgctagatctctc 35222789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 35477045 - 35476995
Alignment:
Q  23 ttggatagaaagagtggaaaaaagtgttgcatccttgctgctaaatctctc 73  Q
    ||||||||||||||||| |||||||||| ||| |||||||||| |||||||    
T  35477045 ttggatagaaagagtgggaaaaagtgttacatgcttgctgctagatctctc 35476995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 351
Target Start/End: Complemental strand, 35203054 - 35202996
Alignment:
Q  292 cacccaatatgtcttcactaatttaattaactcttaagtaaacagttatctacaacttta 351  Q
    ||||||||||||||||| ||| ||||||||||||||| | ||||||||| |||| |||||    
T  35203054 cacccaatatgtcttcattaacttaattaactcttaa-ttaacagttatatacaccttta 35202996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 35192891 - 35192841
Alignment:
Q  23 ttggatagaaagagtggaaaaaagtgttgcatccttgctgctaaatctctc 73  Q
    |||||||| |||||||||||||||||||  || |||||||||| |||||||    
T  35192891 ttggataggaagagtggaaaaaagtgttatatgcttgctgctagatctctc 35192841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 35265409 - 35265360
Alignment:
Q  23 ttggatagaaagagtggaaaaaagtgttgcatccttgctgctaaatctct 72  Q
    ||||| |||||||||||||||||||||| ||| ||| |||||| ||||||    
T  35265409 ttggacagaaagagtggaaaaaagtgttacatgctttctgctagatctct 35265360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 33137662 - 33137707
Alignment:
Q  29 agaaagagtggaaaaaagtgttgcatccttgctgctaaatctctca 74  Q
    |||||||||||| ||||||||| ||| |||||||||| ||||||||    
T  33137662 agaaagagtggacaaaagtgttacatgcttgctgctagatctctca 33137707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University