View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3636_low_6 (Length: 566)
Name: NF3636_low_6
Description: NF3636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3636_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 120 - 542
Target Start/End: Original strand, 38933481 - 38933900
Alignment:
| Q |
120 |
aattaaaatcaaacttatttgtatttacttggtcaaaatttcttgaaattataacattctgtgttacatgcatgaattgaatgctactagcttccaatta |
219 |
Q |
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| T |
38933481 |
aattaaattcaaacttatttgtatttacttggtcaaaatttcttgaaattataacattctgtgttacatgcatgaattgaatgctactagcttccaatta |
38933580 |
T |
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| Q |
220 |
cgaaccagtgagtactactaagttaaagacagaaaagtgtacacactccagcttcaaacagaaaagagaattaaatgcaacatgtcagggctttttgttt |
319 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38933581 |
cgaaccagtgagttctactaagttaaagacagaaaagtgtacacactccagcttcaaacagaaaagagaattaaatgcaacatgtcagggctttttgtgt |
38933680 |
T |
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| Q |
320 |
ggacccatacatactcttcttc---gtatcnnnnnnngcttagcactttcatttgtgacacgtacaggcaatgcttctctttctttcaatgcccttccat |
416 |
Q |
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| T |
38933681 |
ggacccatacatactcttcttcttcgtatcaaaaaaagcttagccctttcatttgtgacacgtacaggcaatgctcctctttctttcaatgcccttccat |
38933780 |
T |
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| Q |
417 |
ataggatggggcatggcttgtaagctcagtgagtgcttcctgactgactgtcccagcaatgcatcatgcatgcaatgcaattcatttcctatctcttc-t |
515 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38933781 |
ataggatggggcatggcttgtaagctc----agtgcttc----ctgactgtcccagcaatgcatcatgcatgcaatgcaattcatttcctatctcttctt |
38933872 |
T |
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| Q |
516 |
tttttatatgtc-ttgtgaaaactttta |
542 |
Q |
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| T |
38933873 |
tttttatatgtctttgtgaaaactttta |
38933900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 38933310 - 38933371
Alignment:
| Q |
19 |
cacacacacagtaagtgaactactactgacctcaaacaaactttcttttcttctctcttgat |
80 |
Q |
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| T |
38933310 |
cacacacacagtaagtgaactactactgacctcaaacaaactttcttttcttctctcttgat |
38933371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 306
Target Start/End: Original strand, 32670903 - 32670932
Alignment:
| Q |
277 |
acagaaaagagaattaaatgcaacatgtca |
306 |
Q |
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| T |
32670903 |
acagaaaagagaattaaatgcaacatgtca |
32670932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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