View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3636_low_7 (Length: 531)
Name: NF3636_low_7
Description: NF3636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3636_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 13 - 513
Target Start/End: Original strand, 40650238 - 40650739
Alignment:
| Q |
13 |
aatatattagtagattttgatgcnnnnnnnnaactctaaaatgccgagcttgaaatatgggtcatctgatcttgatccaacagccacaaatgaatgactt |
112 |
Q |
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| T |
40650238 |
aatatattagtagattttgatgcttttttt-aactctaaaatgccgagcttgaaatatgggtcatctgatcttgattcaacaaccacaaatggatgactt |
40650336 |
T |
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| Q |
113 |
agtgaatgcatggaaattgtgactacaatacatctaaatcctaacatttctcagccatcacttaagcagtaagaaatgacgacttaaacctttcttcctt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40650337 |
agtgaatgcatggaaattgtgactacaatacatctaaatcctaacatttctcagtcatcacttaagcagtaagaaatgacgacttaaacctttcttcctt |
40650436 |
T |
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| Q |
213 |
tgtttatttagagagaatctattaaaaggtcattaaaactttaactatcaccaactagtgtgcaataacaatgagccaacaaaaagtttattggatgcat |
312 |
Q |
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| T |
40650437 |
tgtttatttagagagaatctattaaaaggtcattaaaactttaactatcaccaactagtgtgcaataacaatgagccaacaaaaagtttattggatgcat |
40650536 |
T |
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| Q |
313 |
caatgtcatatcaattccaacatcaaattcattctcagcnnnnnnnnnaaatgaagtgagaaatatatatttaaatttaaaactaaacaaagagtcatgt |
412 |
Q |
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| T |
40650537 |
caatgtcatatcaattccaacatcaaattcattctcagcttttttttaaaatgaagtgagaaatatatatttaaatttaaaactaaacaaagagtcacgt |
40650636 |
T |
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| Q |
413 |
tgttcagatgc--ataatgcaactttcagctcttcaaaatttagaatttgaacattttgaacctgtaattttactgcatatttaatttgctataaagcac |
510 |
Q |
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| T |
40650637 |
tgttcagatgcatataatgcaactttcagctcttcaaaatttagaatttgaacattttgaacctgtaattttactgcatatttaatttgctataaagcac |
40650736 |
T |
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| Q |
511 |
tat |
513 |
Q |
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| T |
40650737 |
tat |
40650739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 3706393 - 3706429
Alignment:
| Q |
57 |
cgagcttgaaatatgggtcatctgatcttgatccaac |
93 |
Q |
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||||||||||| |||| |||||||||||||||||||| |
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| T |
3706393 |
cgagcttgaaacatggatcatctgatcttgatccaac |
3706429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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