View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3636_low_8 (Length: 496)

Name: NF3636_low_8
Description: NF3636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3636_low_8
NF3636_low_8
[»] chr3 (2 HSPs)
chr3 (21-257)||(5571711-5571947)
chr3 (270-385)||(5572347-5572465)
[»] scaffold0098 (1 HSPs)
scaffold0098 (21-389)||(343-705)
[»] chr6 (2 HSPs)
chr6 (22-139)||(24732732-24732849)
chr6 (23-139)||(24712336-24712452)
[»] chr5 (2 HSPs)
chr5 (419-488)||(540397-540466)
chr5 (173-236)||(8212688-8212756)
[»] chr2 (1 HSPs)
chr2 (419-488)||(28823953-28824022)
[»] chr4 (2 HSPs)
chr4 (419-488)||(30562321-30562390)
chr4 (419-488)||(54902114-54902183)
[»] chr8 (1 HSPs)
chr8 (431-488)||(9333483-9333540)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 21 - 257
Target Start/End: Original strand, 5571711 - 5571947
Alignment:
Q  21 gtgtatgtagtgaatatagatcagtgcagttagtcactacctaagtattcaatttgaatgaattcaacaagtaggattcatcgaatcgacatgaaattga 120  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5571711 gtgtatgtagtgaatatagatatgtgcagttagtcactacctaagtattcaatttgaatgaattcaacaagaaggattcatcgaatcgacatgaaattga 5571810  T
Q  121 tgtgctttcattgactgcaatcttctgggattttgttagtaactgtttgatagtacactttttcttttggtcttatttctattttctctgcattctttgt 220  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||    
T  5571811 tgtgctttcattgactgcaatctcctgggattttgttagtaactgtttgatagtacactttttcttttggtcttatttccatcttctctgcattcttggt 5571910  T
Q  221 gctaatgataatcaaatactagaacttagaagtataa 257  Q
    ||||||||| |||||||||||||||||||||||||||    
T  5571911 gctaatgatgatcaaatactagaacttagaagtataa 5571947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 270 - 385
Target Start/End: Original strand, 5572347 - 5572465
Alignment:
Q  270 ggggttatttatgtatttatatatggtctaggacatgttaattgatggactatgtccctttaaatgttt---gaattcaataaactatgtttaagataaa 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||   ||||||||||||||||||||||||||||    
T  5572347 ggggttatttatgtatttatatatggtctaggacatgttaattgatggactatgtccctttaaatatttagagaattcaataaactatgtttaagataaa 5572446  T
Q  367 attacaacattgggtttct 385  Q
    |||||||||||||||||||    
T  5572447 attacaacattgggtttct 5572465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 21 - 389
Target Start/End: Complemental strand, 705 - 343
Alignment:
Q  21 gtgtatgtagtgaatatagatcagtgcagttagtcactacctaagtattcaatttgaatgaattcaacaagtaggattcatcgaatcgacatgaaattga 120  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||| |    
T  705 gtgtatgtagtgaatatagattagtgcagttagtcactacctaagtattcaatttgaatgaattcaacaagtataattcatcgaatcggcatgaaattaa 606  T
Q  121 tgtgctttcattgactgcaatcttctgggattttgttagtaactgtttgatagtacactttttcttttggtcttatttctattttctctgcattctttgt 220  Q
    |||||||||||| || ||| |||  |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  605 tgtgctttcatttacagcattctcttgggattttgatagtaacagtttgatagtacactttttcttttggtcttatttctatcttctatgcattctttgt 506  T
Q  221 gctaatgataatcaaatactagaacttagaagtataannnnnnnnnnnnggggttatttatgtatttatatatggtctaggacatgttaattgatggact 320  Q
    ||||||||||||||||||||       |||| ||||             |||||||||||||||||    ||||||||||||||||||||||||||||      
T  505 gctaatgataatcaaatact-------agaaatatattttttgttttttggggttatttatgtatt----tatggtctaggacatgttaattgatggatc 417  T
Q  321 atgtccctttaaatgttt---gaattcaataaa--ctatgtttaagataaaattacaacattgggtttcttaat 389  Q
    ||||||||||||||||||    |||| ||||||  |||||||||||||||||||||||||||||||||||||||    
T  416 atgtccctttaaatgtttaaataatttaataaattctatgtttaagataaaattacaacattgggtttcttaat 343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 5e-48; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 22 - 139
Target Start/End: Original strand, 24732732 - 24732849
Alignment:
Q  22 tgtatgtagtgaatatagatcagtgcagttagtcactacctaagtattcaatttgaatgaattcaacaagtaggattcatcgaatcgacatgaaattgat 121  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  24732732 tgtatatagtgaatatagattagtgcagttagtcactacctaagtattcaatttgaatgaattcaacaagtaggattcgtcgaatcggcatgaaattgat 24732831  T
Q  122 gtgctttcattgactgca 139  Q
    ||||||||||| ||||||    
T  24732832 gtgctttcatttactgca 24732849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 23 - 139
Target Start/End: Original strand, 24712336 - 24712452
Alignment:
Q  23 gtatgtagtgaatatagatcagtgcagttagtcactacctaagtattcaatttgaatgaattcaacaagtaggattcatcgaatcgacatgaaattgatg 122  Q
    ||||||||||||||||||| ||| |||||||||||||||| |||||| ||||||||| |||||||||||||||||||||| |||||  ||||||||||||    
T  24712336 gtatgtagtgaatatagattagtacagttagtcactacctgagtatttaatttgaattaattcaacaagtaggattcatcaaatcgggatgaaattgatg 24712435  T
Q  123 tgctttcattgactgca 139  Q
    |||||| ||| ||||||    
T  24712436 tgcttttatttactgca 24712452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 419 - 488
Target Start/End: Complemental strand, 540466 - 540397
Alignment:
Q  419 aaggtccagctgtggtccttctaatatgacctgttatagccaatagtagatgcagttccatgttcatctc 488  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||    
T  540466 aaggtccagctgtggtccttctaatatgacctgttatagctagtagtagatgcagttccatgttcttctc 540397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 8212688 - 8212756
Alignment:
Q  173 gtacactttttc-ttttggtcttatttcta----ttttctctgcattctttgtgctaatgataatcaaa 236  Q
    |||||||||||| |||||||||||||||||    | |||||||| ||||||||||||||||||||||||    
T  8212688 gtacactttttccttttggtcttatttctagctatcttctctgctttctttgtgctaatgataatcaaa 8212756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 419 - 488
Target Start/End: Complemental strand, 28824022 - 28823953
Alignment:
Q  419 aaggtccagctgtggtccttctaatatgacctgttatagccaatagtagatgcagttccatgttcatctc 488  Q
    |||||||| ||||||||||||||||||||||||||||||||  | |||||||||||||||||||| ||||    
T  28824022 aaggtccaactgtggtccttctaatatgacctgttatagcccgtggtagatgcagttccatgttcttctc 28823953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 419 - 488
Target Start/End: Complemental strand, 30562390 - 30562321
Alignment:
Q  419 aaggtccagctgtggtccttctaatatgacctgttatagccaatagtagatgcagttccatgttcatctc 488  Q
    |||||||| |||||||||||||||||||||||| |||||||  | |||||||||||||||||||| ||||    
T  30562390 aaggtccaactgtggtccttctaatatgacctgatatagcccgtggtagatgcagttccatgttcttctc 30562321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 419 - 488
Target Start/End: Complemental strand, 54902183 - 54902114
Alignment:
Q  419 aaggtccagctgtggtccttctaatatgacctgttatagccaatagtagatgcagttccatgttcatctc 488  Q
    |||||||| |||||||||||||||||||||||| |||||||  | |||||||||||||||||||| ||||    
T  54902183 aaggtccaactgtggtccttctaatatgacctgatatagcccgtggtagatgcagttccatgttcttctc 54902114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 431 - 488
Target Start/End: Complemental strand, 9333540 - 9333483
Alignment:
Q  431 tggtccttctaatatgacctgttatagccaatagtagatgcagttccatgttcatctc 488  Q
    ||||||||||||||||||||| |||||||  | |||||||||||||||||||| ||||    
T  9333540 tggtccttctaatatgacctgatatagcccgtggtagatgcagttccatgttcttctc 9333483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University