View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3636_low_9 (Length: 479)
Name: NF3636_low_9
Description: NF3636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3636_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 18 - 473
Target Start/End: Original strand, 43650568 - 43651019
Alignment:
| Q |
18 |
aaggagaagggttttggcgggacggggagcgtgaagaggaagaagatgaacggtaggtgtttgtgaaaatgcggcactcggagtgagtctgggaatcgcg |
117 |
Q |
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| T |
43650568 |
aaggagaagggttttggcgggacggggagcgtgaagaggaagaagatgaacggtaggtgtttgtgaaaatgcggcactcgtagtgagtctgggaatcgcg |
43650667 |
T |
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| Q |
118 |
aaaagggtggttttcaaaatcagtctcatgggttgagtccttccttatttattgcgttgtgtttgcgtgacggttgttaaatcagattgtttcaacttgg |
217 |
Q |
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| T |
43650668 |
aaaagggtggttttcaaaatcagtctcatgggttgagtcct----tatttattgcgttgtgtttgcgttacggttgttaaatcagattgtttcaacttgg |
43650763 |
T |
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| Q |
218 |
gtcgggtcaagtgggagccggctcagagtcagaggggtgggtcaagtgtactattggtgggtgtcgtcgagctgcttgtgtcgtgtctttggaaatgagt |
317 |
Q |
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| T |
43650764 |
gtcgggtcaagtgggagccggctcagagtcagaggggtgggtcaagtgtactattggtgggtgtcgtcgagctgcttgtgtcgtgtctttgggaatgagt |
43650863 |
T |
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| Q |
318 |
cgggttactattgatctagtaattttattttattaatttactaacggataacattacattcacattcaattccgataaataaggaacaattgagttattt |
417 |
Q |
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| T |
43650864 |
cgggttattattgatctagtaattttattttattaatttactaacggataacattacattcacattcaattccgataaataaggaacaattgagttattt |
43650963 |
T |
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| Q |
418 |
gtttattttatttgcaaaaattgaaggccatttttcaaaatcaaaccctatgctac |
473 |
Q |
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| T |
43650964 |
gtttattttatttgcaaaaattgaaggccatttttcaaaatcaaaccttatgctac |
43651019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 43619536 - 43619580
Alignment:
| Q |
19 |
aggagaagggttttggcgggacggggagcgtgaagaggaagaaga |
63 |
Q |
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| T |
43619536 |
aggagaaggattttggtgggacggtgagagtgaagaggaagaaga |
43619580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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