View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3637_high_1 (Length: 520)
Name: NF3637_high_1
Description: NF3637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3637_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 266 - 504
Target Start/End: Complemental strand, 37190885 - 37190647
Alignment:
| Q |
266 |
ggtttggtaatatggaacgccgcgttttacgtggcggggtggttgggggtttggcgactcgcttgaagcgttgtggttttggggtcattacgacggtgtt |
365 |
Q |
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| T |
37190885 |
ggttgggtaatatggaacgccgcgttttacgtggcggggtggttgggggtttggctactcgcttgaagcgttgtggttttggggtcattacgacggtgtt |
37190786 |
T |
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| Q |
366 |
gctgtggtaacggaatgaatcaagtgaagaagattcgagagttgatgacgtggtggggatggaacgagggaaagacatgcttcatatgtagcttttcttc |
465 |
Q |
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| T |
37190785 |
gctgtggtaacggaatgaatcaagtgaagaagattcgggagttgatgacgtggtcgggatggaacgagggaaagacatgcttcatatgtagcttttcttc |
37190686 |
T |
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| Q |
466 |
tattgcttctgccgttaacgttgatcgatacataaaatg |
504 |
Q |
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| T |
37190685 |
tattgcttctgccgttaacgttgatcgatacataaaatg |
37190647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 37191123 - 37191259
Alignment:
| Q |
1 |
gacttgagaattgcgacaacttttgaaaacaacttatcacattcatcagcttgtaaaaacagtttatatctttgtaacttctaattcaagataaccgcaa |
100 |
Q |
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| T |
37191123 |
gacttgagaattgcgacaacttttgaaaacaacttatcacattgatcagcttgtaaaaacagtttatatctttgtaacttctaattcaagataaccgcaa |
37191222 |
T |
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| Q |
101 |
tcattttctctcaacagttccttagttttaggtacaa |
137 |
Q |
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| T |
37191223 |
tcattttctcttaacagttccttagttttaggtacaa |
37191259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 196 - 274
Target Start/End: Original strand, 37191317 - 37191395
Alignment:
| Q |
196 |
acgatttaacaaggaattaatgttggataggttgaagcatatagatcaaatgactcagctagtcatggtcggtttggta |
274 |
Q |
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| T |
37191317 |
acgatttaacaaggaattaatgttggataggttgaagcatatagatcaaatgactcagctagtcatggtcggtttggta |
37191395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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