View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3637_high_2 (Length: 379)

Name: NF3637_high_2
Description: NF3637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3637_high_2
NF3637_high_2
[»] chr3 (7 HSPs)
chr3 (206-379)||(36956008-36956181)
chr3 (19-182)||(36955824-36955987)
chr3 (259-358)||(36939484-36939583)
chr3 (259-376)||(36993649-36993766)
chr3 (259-376)||(37019089-37019206)
chr3 (34-140)||(36993496-36993602)
chr3 (34-140)||(37018936-37019042)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 4e-91; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 206 - 379
Target Start/End: Original strand, 36956008 - 36956181
Alignment:
Q  206 aatcatatcacatattgatctttttagttaacattgattgtgattgaatattgttttgatttcattataggtgttagagttggggattattgttcactct 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36956008 aatcatatcacatattgatctttttagttaacattgattgtgattgaatattgttttgatttcattataggtgttggagttggggattattgttcactct 36956107  T
Q  306 gttataataggaatttctctgggtgcttcagagagtcctaaaaccataaggccgcttgtagctgcgttgacctt 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36956108 gttataataggaatttctctgggtgcttcagagagtcctaaaaccataaggccgcttgtagctgcgttgacctt 36956181  T

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Target: chr3; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 36955824 - 36955987
Alignment:
Q  19 caacaaggacatgtgcatgttcatactcatgcatcccatggtcatgcacatggccatgtttcttccgatccgtcttcagaacttcttcgacatagggtca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36955824 caacaaggacatgtgcatgttcatactcatgcatcccatggtcatgcacatggccatgtttcttccgatccgtcttcagaacttcttcgtcatagggtca 36955923  T
Q  119 tatcgcaggtaatgatattatatataatttttattatgtactaactatgtaagacttttgatta 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36955924 tatcgcaggtaatgatattatatataatttttattatgtactaactatgtaagacttttgatta 36955987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 259 - 358
Target Start/End: Original strand, 36939484 - 36939583
Alignment:
Q  259 ttttgatttcattataggtgttagagttggggattattgttcactctgttataataggaatttctctgggtgcttcagagagtcctaaaaccataaggcc 358  Q
    |||||||||||| |||||| || |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  36939484 ttttgatttcataataggtattggagttgggaattattgttcactccgttataataggaatttctctgggtgcttcagagagtcctaagactataaggcc 36939583  T

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Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 259 - 376
Target Start/End: Original strand, 36993649 - 36993766
Alignment:
Q  259 ttttgatttcattataggtgttagagttggggattattgttcactctgttataataggaatttctctgggtgcttcagagagtcctaaaaccataaggcc 358  Q
    ||||||||| || ||||||||| |||||||| |||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||| ||    
T  36993649 ttttgattttatcataggtgttggagttgggaattattgttcactctgttatcataggaatttctttaggtgcttcagagagtcctaaaaccataagacc 36993748  T
Q  359 gcttgtagctgcgttgac 376  Q
      | || |||||||||||    
T  36993749 attagtggctgcgttgac 36993766  T

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Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 259 - 376
Target Start/End: Original strand, 37019089 - 37019206
Alignment:
Q  259 ttttgatttcattataggtgttagagttggggattattgttcactctgttataataggaatttctctgggtgcttcagagagtcctaaaaccataaggcc 358  Q
    ||||||||| || ||||||||| |||||||| |||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||| ||    
T  37019089 ttttgattttatcataggtgttggagttgggaattattgttcactctgttatcataggaatttctttaggtgcttcagagagtcctaaaaccataagacc 37019188  T
Q  359 gcttgtagctgcgttgac 376  Q
      | || |||||||||||    
T  37019189 attagtggctgcgttgac 37019206  T

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Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 36993496 - 36993602
Alignment:
Q  34 catgttcatactcatgcatcccatggtcatgcacatggccatgtttcttccgatccgtcttcagaacttcttcgacatagggtcatatcgcaggtaatga 133  Q
    ||||||||| |||| ||||| ||| ||||||||||||| ||| |||||| ||||| ||| |||||||||||||| |||||||||||||| |||||||| |    
T  36993496 catgttcatgctcacgcatcacatagtcatgcacatggtcatatttctttcgatcagtcatcagaacttcttcgtcatagggtcatatcacaggtaataa 36993595  T
Q  134 tattata 140  Q
    || ||||    
T  36993596 taatata 36993602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 37018936 - 37019042
Alignment:
Q  34 catgttcatactcatgcatcccatggtcatgcacatggccatgtttcttccgatccgtcttcagaacttcttcgacatagggtcatatcgcaggtaatga 133  Q
    ||||||||| |||| ||||| ||| ||||||||||||| ||| |||||| ||||| ||| |||||||||||||| |||||||||||||| |||||||| |    
T  37018936 catgttcatgctcacgcatcacatagtcatgcacatggtcatatttctttcgatcagtcatcagaacttcttcgtcatagggtcatatcacaggtaataa 37019035  T
Q  134 tattata 140  Q
    || ||||    
T  37019036 taatata 37019042  T

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