View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3637_high_4 (Length: 247)
Name: NF3637_high_4
Description: NF3637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3637_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 5465341 - 5465115
Alignment:
| Q |
11 |
catcaccaccaatgatctgaatgtatgaaagtgtggattgaaaataacaacataagtttcttttggtttttggattgaaaaataacaacaataagccttg |
110 |
Q |
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| T |
5465341 |
catcaccaccaatgatctgaatgtatgaaagtgtggattgaaaataacaacataagtttcttttggtttttggattgaaaaataacaacaataagccttg |
5465242 |
T |
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| Q |
111 |
ttacaacattttaagtcagtacttggagtcttcaattttactttgttttgggtttacctaatagctaatttcaagaagcattgtgtgtcatcattttaca |
210 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5465241 |
ttacaacattttaagtcagtactttgagtcttcaattttactttgttttgggtttacctaatagctaatttcaagaagcattgtgtgtcatcattttaca |
5465142 |
T |
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| Q |
211 |
ctttaagtttgttagaagttttgatga |
237 |
Q |
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||||||||||||||||||||||||||| |
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| T |
5465141 |
ctttaagtttgttagaagttttgatga |
5465115 |
T |
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