View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3637_low_8 (Length: 244)
Name: NF3637_low_8
Description: NF3637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3637_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 63 - 228
Target Start/End: Complemental strand, 2873052 - 2872885
Alignment:
| Q |
63 |
caaacaatgcattgctataacacattcaaatacacttaaaaacattcaaagacaacacaatcaacattgatcacattaaattcattcaacattgaaatga |
162 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2873052 |
caaacaatgcattgctataacacattcaaatacacttaaaaacattcaaagacaacacaatcaacattgatcacattaaattcattcaacattgaaacga |
2872953 |
T |
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| Q |
163 |
c--aaaaattttgtgtatttcattcatcacgtcaatattcgtacacattcaaaatagtaattgttgtg |
228 |
Q |
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| T |
2872952 |
cataaaatttttgtgtatttcattcatcacgtcaatattcgtacacattcaaaatagtaattgttgtg |
2872885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 2873158 - 2873119
Alignment:
| Q |
1 |
ttataaacaaaagggtcatgggccaaaacaccacgatcac |
40 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
2873158 |
ttataaacaaaagggtcatgggccaaaacaccacgatcac |
2873119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2903668 - 2903632
Alignment:
| Q |
1 |
ttataaacaaaagggtcatgggccaaaacaccacgat |
37 |
Q |
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| T |
2903668 |
ttataaacaaaagggtcatgggccaaaacaccacgat |
2903632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 66 - 164
Target Start/End: Original strand, 30065584 - 30065683
Alignment:
| Q |
66 |
acaatgcattgctataacacattcaaatacacttaaaaacattcaaagacaacacaatcaacattgatcacat-taaattcattcaacattgaaatgaca |
164 |
Q |
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| T |
30065584 |
acaatgcattgacataacacacacaaacacacttaaaaacattcaaagacaagacattcaacattcatcacatcaaaattcattcaacattcaaatgaca |
30065683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 175
Target Start/End: Complemental strand, 29911850 - 29911740
Alignment:
| Q |
66 |
acaatgcattgctataacacattcaaatacacttaaaaacattcaaagacaacacaatcaacattgatcacat-taaattcattcaacattgaaatgaca |
164 |
Q |
| |
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||||||||||| |||||||| ||| |||||||||||||||||||| ||| ||| |||||||| ||||||| |||||||||||||||| |||||||| |
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| T |
29911850 |
acaatgcattgacataacacacaaaaacacacttaaaaacattcaaaggcaagacattcaacattcatcacatcaaaattcattcaacattcaaatgaca |
29911751 |
T |
|
| Q |
165 |
aaaattttgtg |
175 |
Q |
| |
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||| |||||| |
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|
| T |
29911750 |
taaagtttgtg |
29911740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 175
Target Start/End: Complemental strand, 29913870 - 29913760
Alignment:
| Q |
66 |
acaatgcattgctataacacattcaaatacacttaaaaacattcaaagacaacacaatcaacattgatcacat-taaattcattcaacattgaaatgaca |
164 |
Q |
| |
|
||||||||||| |||||||| ||| |||||||||||||||||||| ||| ||| |||||||| ||||||| |||||||||||||||| |||||||| |
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| T |
29913870 |
acaatgcattgacataacacacaaaaacacacttaaaaacattcaaaggcaagacattcaacattcatcacatcaaaattcattcaacattcaaatgaca |
29913771 |
T |
|
| Q |
165 |
aaaattttgtg |
175 |
Q |
| |
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||| |||||| |
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|
| T |
29913770 |
taaagtttgtg |
29913760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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