View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3638_high_2 (Length: 405)

Name: NF3638_high_2
Description: NF3638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3638_high_2
NF3638_high_2
[»] chr5 (3 HSPs)
chr5 (143-386)||(36735185-36735428)
chr5 (1-74)||(36735499-36735572)
chr5 (232-377)||(36738118-36738263)
[»] chr3 (12 HSPs)
chr3 (179-319)||(22795675-22795815)
chr3 (185-319)||(22790400-22790534)
chr3 (185-319)||(22822871-22823005)
chr3 (185-319)||(22824640-22824774)
chr3 (179-304)||(22784249-22784374)
chr3 (179-304)||(22788613-22788738)
chr3 (179-319)||(22786027-22786167)
chr3 (179-319)||(22793916-22794056)
chr3 (185-319)||(22826408-22826542)
chr3 (264-319)||(22793802-22793857)
chr3 (233-335)||(22784083-22784187)
chr3 (233-335)||(22788447-22788551)
[»] chr8 (3 HSPs)
chr8 (179-304)||(5613153-5613278)
chr8 (179-319)||(5611360-5611500)
chr8 (233-335)||(5613340-5613444)
[»] chr6 (1 HSPs)
chr6 (270-318)||(4038759-4038807)


Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 143 - 386
Target Start/End: Complemental strand, 36735428 - 36735185
Alignment:
Q  143 gccaacaatgtgtcgagtgaaggcaaaaccaagtgcaacgaaggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaatt 242  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36735428 gccaacgatgtgtcgagtgaaggcaaaaccaagtgcaacgaaggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaatt 36735329  T
Q  243 cgagacccatggagaaaaccatatgtatggttaggcacttttgatacagctgaacaagcagctcaagcttatgatgccacagccacttcataccgtggga 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36735328 cgagacccatggagaaaaccatatgtatggttaggcacttttgatacagctgaacaagcagctcaagcttatgatgccacagccacttcataccgtggga 36735229  T
Q  343 acaatgccataacaaacttcccaataccttacaatgccgcgaac 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  36735228 acaatgccataacaaacttcccaataccttacaatgccgcgaac 36735185  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 36735572 - 36735499
Alignment:
Q  1 aaactgatattctttttgttgatagagaaggtatgttgagaaatgatatttatatctccctctttcataagcga 74  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36735572 aaacagatattctttttgttgacagagaaggtatgttgagaaatgatatttatatctccctctttcataagcga 36735499  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 232 - 377
Target Start/End: Complemental strand, 36738263 - 36738118
Alignment:
Q  232 gtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggcacttttgatacagctgaacaagcagctcaagcttatgatgccacagccacttc 331  Q
    ||||| |||||||| |||| |||| ||||| || || ||||||||||||||   |||| || || |||||||| | |||||| |||||  |||| | |||    
T  36738263 gtgcagaaattcgaaacccctggaaaaaacaatgtgaatggttaggcacttacaatactgcagagcaagcagcccgagcttacgatgcagcagctatttc 36738164  T
Q  332 ataccgtgggaacaatgccataacaaacttcccaataccttacaat 377  Q
    || |||||||  ||||||||| ||||||||||||||||||||||||    
T  36738163 attccgtggggtcaatgccattacaaacttcccaataccttacaat 36738118  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 179 - 319
Target Start/End: Complemental strand, 22795815 - 22795675
Alignment:
Q  179 aacgaaggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggc 278  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||  |  |  ||||  ||||| ||||||||||||||||| | |||||||| |||||     
T  22795815 aacgaaggaaattcgttactgaggcgtgaggaagacaaaatatggcagatacggtgcggaaatttgagacccatggagaaaagcttatgtatgattagga 22795716  T
Q  279 acttttgatacagctgaacaagcagctcaagcttatgatgc 319  Q
    |||| ||||| |||||| |||||||| || ||||| |||||    
T  22795715 acttatgatagagctgatcaagcagcacaggcttacgatgc 22795675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 185 - 319
Target Start/End: Complemental strand, 22790534 - 22790400
Alignment:
Q  185 ggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggcactttt 284  Q
    |||||||||||||||  ||||||||||||||||| ||||  |  || ||||  ||||| |||||||||||| |||| | | ||||| ||||| ||||| |    
T  22790534 ggaaattcgttaccgaggcgtgaggaagacaaaaaatggcagatatggtgcggaaatttgagacccatggaaaaaagcttctgtatagttagacacttat 22790435  T
Q  285 gatacagctgaacaagcagctcaagcttatgatgc 319  Q
    |||| ||||||||||||||| | |||||| |||||    
T  22790434 gatagagctgaacaagcagcacgagcttacgatgc 22790400  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 185 - 319
Target Start/End: Complemental strand, 22823005 - 22822871
Alignment:
Q  185 ggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggcactttt 284  Q
    |||||||||||||||  ||||||||||||||||| ||||  |  || ||||  ||||| |||||||||||| |||| | | ||||| ||||| ||||| |    
T  22823005 ggaaattcgttaccgaggcgtgaggaagacaaaaaatggcagatatggtgcggaaatttgagacccatggaaaaaagcttctgtatagttagacacttat 22822906  T
Q  285 gatacagctgaacaagcagctcaagcttatgatgc 319  Q
    |||| ||||||||||||||| | |||||| |||||    
T  22822905 gatagagctgaacaagcagcacgagcttacgatgc 22822871  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 185 - 319
Target Start/End: Complemental strand, 22824774 - 22824640
Alignment:
Q  185 ggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggcactttt 284  Q
    |||||||||||||||  ||||||||||||||||| ||||  |  || ||||  ||||| |||||||||||| |||| | | ||||| ||||| ||||| |    
T  22824774 ggaaattcgttaccgaggcgtgaggaagacaaaaaatggcagatatggtgcggaaatttgagacccatggaaaaaagcttctgtatagttagacacttat 22824675  T
Q  285 gatacagctgaacaagcagctcaagcttatgatgc 319  Q
    |||| ||||||||||||||| | |||||| |||||    
T  22824674 gatagagctgaacaagcagcacgagcttacgatgc 22824640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 179 - 304
Target Start/End: Complemental strand, 22784374 - 22784249
Alignment:
Q  179 aacgaaggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggc 278  Q
    |||||||||||||||||||||  || |||||||||||||| ||||  |  |  ||||  ||||| ||||||||||||||||| | | |||||| |||||     
T  22784374 aacgaaggaaattcgttaccgaggcttgaggaagacaaaaaatggcagatacggtgcggaaatttgagacccatggagaaaagcttctgtatgattagga 22784275  T
Q  279 acttttgatacagctgaacaagcagc 304  Q
    |||| ||||| |||||||||||||||    
T  22784274 acttatgataaagctgaacaagcagc 22784249  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 179 - 304
Target Start/End: Complemental strand, 22788738 - 22788613
Alignment:
Q  179 aacgaaggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggc 278  Q
    |||||||||||||||||||||  || |||||||||||||| ||||  |  |  ||||  ||||| ||||||||||||||||| | | |||||| |||||     
T  22788738 aacgaaggaaattcgttaccgaggcttgaggaagacaaaaaatggcagatacggtgcggaaatttgagacccatggagaaaagcttctgtatgattagga 22788639  T
Q  279 acttttgatacagctgaacaagcagc 304  Q
    |||| ||||| |||||||||||||||    
T  22788638 acttatgataaagctgaacaagcagc 22788613  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 179 - 319
Target Start/End: Complemental strand, 22786167 - 22786027
Alignment:
Q  179 aacgaaggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggc 278  Q
    |||||||||||||||||||||  ||||||||||||| ||| ||||  |  |  ||||  ||||| ||||||||||||||||| | | |||||| |||||     
T  22786167 aacgaaggaaattcgttaccgaggcgtgaggaagacgaaaaatggcagatacggtgcggaaatttgagacccatggagaaaagcttctgtatgattagga 22786068  T
Q  279 acttttgatacagctgaacaagcagctcaagcttatgatgc 319  Q
    |||| ||||| |||||| |||| ||| |||||||| |||||    
T  22786067 acttatgatagagctgatcaagtagcacaagcttacgatgc 22786027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 179 - 319
Target Start/End: Complemental strand, 22794056 - 22793916
Alignment:
Q  179 aacgaaggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggc 278  Q
    |||||||||||||||||||||  ||||||||||||| ||| ||||  |  |   |||  ||||| |||||| |||||||||| | |||||||  |||||     
T  22794056 aacgaaggaaattcgttaccgaggcgtgaggaagacgaaaaatggcagatacgatgcggaaatttgagaccgatggagaaaagcttatgtattattagga 22793957  T
Q  279 acttttgatacagctgaacaagcagctcaagcttatgatgc 319  Q
    |||| ||||| |||||| |||||||| |||||||| |||||    
T  22793956 acttatgatagagctgatcaagcagcacaagcttacgatgc 22793916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 185 - 319
Target Start/End: Complemental strand, 22826542 - 22826408
Alignment:
Q  185 ggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggcactttt 284  Q
    ||||||||||||| |  ||||||||||||||||| ||||  |  || ||||  ||||| |||||||||||| |||| | | ||||| ||||| ||||| |    
T  22826542 ggaaattcgttactgaggcgtgaggaagacaaaaaatggcagatatggtgcggaaatttgagacccatggaaaaaagcttctgtatagttagacacttat 22826443  T
Q  285 gatacagctgaacaagcagctcaagcttatgatgc 319  Q
    |||| ||||||||||||| | | |||||| |||||    
T  22826442 gatagagctgaacaagcaacacgagcttacgatgc 22826408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 319
Target Start/End: Original strand, 22793802 - 22793857
Alignment:
Q  264 tatgtatggttaggcacttttgatacagctgaacaagcagctcaagcttatgatgc 319  Q
    |||||||||||| |||||| |||||| |||||||||||||| | ||||||||||||    
T  22793802 tatgtatggttatgcacttatgatacggctgaacaagcagcacgagcttatgatgc 22793857  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 335
Target Start/End: Original strand, 22784083 - 22784187
Alignment:
Q  233 tgcaaaaattcgagacccatggagaaaac--catatgtatggttaggcacttttgatacagctgaacaagcagctcaagcttatgatgccacagccactt 330  Q
    |||| |||||||| ||||||||| ||||   | |||||||||||| |||||| |||||| |||||||||||||| ||  |||| ||||| ||| ||| ||    
T  22784083 tgcagaaattcgaaacccatggaaaaaaatgcttatgtatggttatgcacttatgatacggctgaacaagcagcacacacttacgatgcaacaaccattt 22784182  T
Q  331 catac 335  Q
    |||||    
T  22784183 catac 22784187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 335
Target Start/End: Original strand, 22788447 - 22788551
Alignment:
Q  233 tgcaaaaattcgagacccatggagaaaac--catatgtatggttaggcacttttgatacagctgaacaagcagctcaagcttatgatgccacagccactt 330  Q
    |||| |||||||| ||||||||| ||||   | |||||||||||| |||||| |||||| |||||||||||||| ||  |||| ||||| ||| ||| ||    
T  22788447 tgcagaaattcgaaacccatggaaaaaaatgcttatgtatggttatgcacttatgatacggctgaacaagcagcacacacttacgatgcaacaaccattt 22788546  T
Q  331 catac 335  Q
    |||||    
T  22788547 catac 22788551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 179 - 304
Target Start/End: Original strand, 5613153 - 5613278
Alignment:
Q  179 aacgaaggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggc 278  Q
    |||||||||||||||||||||  || |||||||||||||| ||||  |  |  ||||  ||||| ||||||||||||||||| | | |||||| |||||     
T  5613153 aacgaaggaaattcgttaccgaggcttgaggaagacaaaaaatggcagatacggtgcggaaatttgagacccatggagaaaagcttctgtatgattagga 5613252  T
Q  279 acttttgatacagctgaacaagcagc 304  Q
    |||| ||||| |||||||||||||||    
T  5613253 acttatgataaagctgaacaagcagc 5613278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 179 - 319
Target Start/End: Original strand, 5611360 - 5611500
Alignment:
Q  179 aacgaaggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggc 278  Q
    |||||||||||||||||||||  ||||||||||||| ||| ||||  |  |  ||||  ||||| ||||||||||||||||| | | |||||| |||||     
T  5611360 aacgaaggaaattcgttaccgaggcgtgaggaagacgaaaaatggcagatacggtgcggaaatttgagacccatggagaaaagcttctgtatgattagga 5611459  T
Q  279 acttttgatacagctgaacaagcagctcaagcttatgatgc 319  Q
    |||| ||||| |||||| |||| ||| |||||||| |||||    
T  5611460 acttatgatagagctgatcaagtagcacaagcttacgatgc 5611500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 335
Target Start/End: Complemental strand, 5613444 - 5613340
Alignment:
Q  233 tgcaaaaattcgagacccatggagaaaac--catatgtatggttaggcacttttgatacagctgaacaagcagctcaagcttatgatgccacagccactt 330  Q
    |||| |||||||| ||||||||| ||||   | |||||||||||| |||||| |||||| |||||||||||||| ||  |||| ||||| ||| ||| ||    
T  5613444 tgcagaaattcgaaacccatggaaaaaaatgcttatgtatggttatgcacttatgatacggctgaacaagcagcacacacttacgatgcaacaaccattt 5613345  T
Q  331 catac 335  Q
    |||||    
T  5613344 catac 5613340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 4038759 - 4038807
Alignment:
Q  270 tggttaggcacttttgatacagctgaacaagcagctcaagcttatgatg 318  Q
    |||||||| |||||||||||||||||| |||| |||  |||||||||||    
T  4038759 tggttaggaacttttgatacagctgaagaagctgctagagcttatgatg 4038807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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