View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3638_low_1 (Length: 431)

Name: NF3638_low_1
Description: NF3638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3638_low_1
NF3638_low_1
[»] chr3 (4 HSPs)
chr3 (18-417)||(290395-290794)
chr3 (19-160)||(279951-280092)
chr3 (194-283)||(280207-280296)
chr3 (336-388)||(8354176-8354228)
[»] chr2 (9 HSPs)
chr2 (18-417)||(24525447-24525846)
chr2 (18-397)||(24532119-24532497)
chr2 (336-390)||(42436450-42436504)
chr2 (336-388)||(1979988-1980040)
chr2 (336-388)||(4789262-4789314)
chr2 (338-386)||(16107393-16107441)
chr2 (336-383)||(106466-106512)
chr2 (336-366)||(16549969-16549999)
chr2 (336-397)||(3829243-3829304)
[»] chr7 (3 HSPs)
chr7 (301-403)||(6015774-6015876)
chr7 (301-383)||(13316515-13316596)
chr7 (336-381)||(17257432-17257476)
[»] chr1 (5 HSPs)
chr1 (301-403)||(12252506-12252608)
chr1 (336-396)||(18172642-18172701)
chr1 (301-388)||(18547889-18547976)
chr1 (338-386)||(2981105-2981153)
chr1 (335-389)||(29101796-29101850)
[»] chr4 (3 HSPs)
chr4 (336-410)||(4442126-4442200)
chr4 (316-382)||(10266447-10266511)
chr4 (316-382)||(10285472-10285536)
[»] chr8 (2 HSPs)
chr8 (301-409)||(11405858-11405965)
chr8 (336-388)||(26588155-26588207)
[»] chr6 (3 HSPs)
chr6 (336-388)||(7732693-7732745)
chr6 (338-386)||(24585721-24585769)
chr6 (338-388)||(5090494-5090544)
[»] chr5 (2 HSPs)
chr5 (336-388)||(14460178-14460230)
chr5 (336-383)||(29286097-29286143)


Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 417
Target Start/End: Original strand, 290395 - 290794
Alignment:
Q  18 gtaatgtttctacaggagtaccaatgacttggtacaagaccactttcaagacccctgaaggttcagaccttgtagtcctggatttgataggtcttcaaag 117  Q
    |||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  290395 gtaatgtttctatagaaggaccaatgacttggtacaagaccactttcaagacccctgaaggttcaaaccttgtagtcctggatttgataggtcttcaaag 290494  T
Q  118 aggaaaagcatgggttaacggtcaaagtatcggaaggtattggattggtgaaaattcatcttttagattttacgcagtgccaaggccattcttaaataaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  290495 aggaaaagcatgggttaacggtcaaagtatcggaaggtattggattggtgaaaattcatcttttaggttttacgcagtgccaaggccattcttaaataaa 290594  T
Q  218 gatgtaaacacgttggtcttgtttgaagaactgggtctaggtgaaggccctttcaatgtgtctgtcaacatagtcagcaatgaatccagaaattccgtta 317  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||| ||||| |||||    
T  290595 gatgtaaacacgttggtcttgtttgaagagctgggtctaggtgaaggccctttcaatgtgtctgtcgacatagttagcaacgaatccaaaaatttcgtta 290694  T
Q  318 agtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgttatctttaagaaaaataattaga 417  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  290695 agtgggatcaaggttgcatatcatgaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgttatctttaagaaaaataattaga 290794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 160
Target Start/End: Original strand, 279951 - 280092
Alignment:
Q  19 taatgtttctacaggagtaccaatgacttggtacaagaccactttcaagacccctgaaggttcagaccttgtagtcctggatttgataggtcttcaaaga 118  Q
    ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| ||| || |||  |||||| |||| |||||||| ||||| | |    
T  279951 taatgtttctataggagtaccaatgacttggtataagactactttcaagacccctgatggtacaaaccccgtagtcttggacttgataggccttcagaaa 280050  T
Q  119 ggaaaagcatgggttaacggtcaaagtatcggaaggtattgg 160  Q
    ||| ||||||||||||| ||||||||||| ||||||||||||    
T  280051 ggagaagcatgggttaatggtcaaagtattggaaggtattgg 280092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 280207 - 280296
Alignment:
Q  194 gtgccaaggccattcttaaataaagatgtaaacacgttggtcttgtttgaagaactgggtctaggtgaaggccctttcaatgtgtctgtc 283  Q
    ||||||||| ||||||||||||| ||||||||||||||||| |||||||| ||| ||||| | | || |  ||||||||||| |||||||    
T  280207 gtgccaaggtcattcttaaataatgatgtaaacacgttggttttgtttgaggaaatgggttttgatgcaacccctttcaatgcgtctgtc 280296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 388
Target Start/End: Original strand, 8354176 - 8354228
Alignment:
Q  336 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 388  Q
    ||||||||||||||| |||||||||||||||   ||||||| |||||||||||    
T  8354176 tatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 8354228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 18 - 417
Target Start/End: Original strand, 24525447 - 24525846
Alignment:
Q  18 gtaatgtttctacaggagtaccaatgacttggtacaagaccactttcaagacccctgaaggttcagaccttgtagtcctggatttgataggtcttcaaag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||| ||||||||    
T  24525447 gtaatgtttctacaggagtaccaatgacttggtacaagaccactttcaagacccctaaagggtcaaaccttgtagtcctggatttgataggccttcaaag 24525546  T
Q  118 aggaaaagcatgggttaacggtcaaagtatcggaaggtattggattggtgaaaattcatcttttagattttacgcagtgccaaggccattcttaaataaa 217  Q
    |||||||||||||||||| ||||||||||| |||||||||  | |||||||||||||||||||||| | |||||||||||||||||||||||| ||||||    
T  24525547 aggaaaagcatgggttaatggtcaaagtattggaaggtatcagcttggtgaaaattcatcttttaggtattacgcagtgccaaggccattctttaataaa 24525646  T
Q  218 gatgtaaacacgttggtcttgtttgaagaactgggtctaggtgaaggccctttcaatgtgtctgtcaacatagtcagcaatgaatccagaaattccgtta 317  Q
    ||||||||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||||||||| ||||| ||||||  |||||||||||||  ||||    
T  24525647 gatgtaaacacattggtcttgtttgaggaattgggtctgggtgaaggccctttcaatgtgtctgtcgacataatcagcatcgaatccagaaattttgtta 24525746  T
Q  318 agtgggatcaaggttgcatatcataaatatttatacaaaa-atatataaatttataaccaataaaatgatgacaccgttatctttaagaaaaataattag 416  Q
    |||||||||||||||||  ||||| |||||||||| |||| ||| ||||||| ||||||||| ||||||||||||| |||| | || | |||||||||||    
T  24525747 agtgggatcaaggttgctcatcatgaatatttataaaaaatatacataaattcataaccaat-aaatgatgacaccattatgtctatgcaaaataattag 24525845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 24532119 - 24532497
Alignment:
Q  18 gtaatgtttctacaggagtaccaatgacttggtacaagaccactttcaagacccctgaaggttcagaccttgtagtcctggatttgataggtcttcaaag 117  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||    
T  24532119 gtaatgtttctataggagtaccaatgacttggtacaagaccactttcaagacccctgaagggtcaaaccttgtagtcctggatttgataggccttcaaag 24532218  T
Q  118 aggaaaagcatgggttaacggtcaaagtatcggaaggtattggattggtgaaaattcatcttttagattttacgcagtgccaaggccattcttaaataaa 217  Q
    |||||||||||||||||| |||||| |||| ||||||||| || |||||||||||||||||||||| | |||||||||||||||||||||||| ||||||    
T  24532219 aggaaaagcatgggttaatggtcaatgtattggaaggtatcggcttggtgaaaattcatcttttaggtattacgcagtgccaaggccattctttaataaa 24532318  T
Q  218 gatgtaaacacgttggtcttgtttgaagaactgggtctaggtgaaggccctttcaatgtgtctgtcaacatagtcagcaatgaatccagaaattccgtta 317  Q
    ||||||||||| |||||||||||||| ||| ||||||| ||| ||||||||||||||||||||||| ||||| ||||||  |||||||||||||  ||||    
T  24532319 gatgtaaacacattggtcttgtttgaggaattgggtctgggtaaaggccctttcaatgtgtctgtcgacataatcagcatcgaatccagaaattttgtta 24532418  T
Q  318 agtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgttat 397  Q
    |||||||||||||||||  ||||| |||||||||||| ||||| ||||||| ||||||||| ||||||||||||| ||||    
T  24532419 agtgggatcaaggttgctcatcatgaatatttatacagaaatacataaattcataaccaat-aaatgatgacaccattat 24532497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 390
Target Start/End: Complemental strand, 42436504 - 42436450
Alignment:
Q  336 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgaca 390  Q
    |||||||||||||| || |||||||| |||||||||||| |||||||||||||||    
T  42436504 tatcataaatatttctagaaaaatatgtaaatttataacaaataaaatgatgaca 42436450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 388
Target Start/End: Complemental strand, 1980040 - 1979988
Alignment:
Q  336 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 388  Q
    ||||||||||||||| ||||||||||||||| | ||||||| |||||||||||    
T  1980040 tatcataaatatttaaacaaaaatatataaaatcataaccattaaaatgatga 1979988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 388
Target Start/End: Original strand, 4789262 - 4789314
Alignment:
Q  336 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 388  Q
    ||||||||||||||| |||||||||||||||   ||||||| |||||||||||    
T  4789262 tatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 4789314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 386
Target Start/End: Original strand, 16107393 - 16107441
Alignment:
Q  338 tcataaatatttatacaaaaatatataaatttataaccaataaaatgat 386  Q
    |||||||||||||||||||||||||||||   ||||||| |||||||||    
T  16107393 tcataaatatttatacaaaaatatataaaaccataaccattaaaatgat 16107441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 383
Target Start/End: Complemental strand, 106512 - 106466
Alignment:
Q  336 tatcataaatatttatacaaaaatatataaatttataaccaataaaat 383  Q
    |||| ||||||||||||||||| |||||||||||||||| ||||||||    
T  106512 tatcttaaatatttatacaaaa-tatataaatttataactaataaaat 106466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 366
Target Start/End: Original strand, 16549969 - 16549999
Alignment:
Q  336 tatcataaatatttatacaaaaatatataaa 366  Q
    |||||||||||||||||||||||||||||||    
T  16549969 tatcataaatatttatacaaaaatatataaa 16549999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 397
Target Start/End: Original strand, 3829243 - 3829304
Alignment:
Q  336 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgttat 397  Q
    ||||||||||| || |||||||| || |||||| ||||| |||||||| |||||||| ||||    
T  3829243 tatcataaatagttttacaaaaacatttaaattcataacaaataaaattatgacaccattat 3829304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 301 - 403
Target Start/End: Complemental strand, 6015876 - 6015774
Alignment:
Q  301 atccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgttatctt 400  Q
    ||||||||||| |  |||||||| ||||  |||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||| |    
T  6015876 atccagaaatttcaataagtggggtcaaaattgtttatcataaatatttatacaaaaatatataaatttataaccaataaaacgatgacatcattatcat 6015777  T
Q  401 taa 403  Q
    |||    
T  6015776 taa 6015774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 383
Target Start/End: Complemental strand, 13316596 - 13316515
Alignment:
Q  301 atccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaat 383  Q
    ||||||||||| |  |||||||| ||||  |||  |||| ||||||||||||||||| |||| ||||||||||| ||||||||    
T  13316596 atccagaaatttcaataagtggggtcaatattgtttatcttaaatatttatacaaaa-tatacaaatttataactaataaaat 13316515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 17257432 - 17257476
Alignment:
Q  336 tatcataaatatttatacaaaaatatataaatttataaccaataaa 381  Q
    |||||||||| |||||| ||||||||||||||||||||| ||||||    
T  17257432 tatcataaatgtttata-aaaaatatataaatttataactaataaa 17257476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 301 - 403
Target Start/End: Complemental strand, 12252608 - 12252506
Alignment:
Q  301 atccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgttatctt 400  Q
    ||||||||||| |  |||||||| ||||  |||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||| |    
T  12252608 atccagaaatttcaataagtggggtcaaaattgtttatcataaatatttatacaaaaatatataaatttataaccaataaaacgatgacatcattatcat 12252509  T
Q  401 taa 403  Q
    |||    
T  12252508 taa 12252506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 396
Target Start/End: Complemental strand, 18172701 - 18172642
Alignment:
Q  336 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgtta 396  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||| || |||| |||||    
T  18172701 tatcaaaaatatttatacaaaa-tatataaatttataaccaataaaaagaagacatcgtta 18172642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 388
Target Start/End: Original strand, 18547889 - 18547976
Alignment:
Q  301 atccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 388  Q
    ||||||||||| | | ||||||| ||||| | |  ||||||||||||||| |||||||||||||||   ||||||| |||||||||||    
T  18547889 atccagaaatttcataaagtggggtcaagatcgtttatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 18547976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 386
Target Start/End: Complemental strand, 2981153 - 2981105
Alignment:
Q  338 tcataaatatttatacaaaaatatataaatttataaccaataaaatgat 386  Q
    |||||||||||||||||||||||||||||   ||||||| |||||||||    
T  2981153 tcataaatatttatacaaaaatatataaaaccataaccattaaaatgat 2981105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 29101796 - 29101850
Alignment:
Q  335 atatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgac 389  Q
    |||| ||||||||| ||| ||| |||||||||||||||| | |||||||||||||    
T  29101796 atattataaatattaataaaaatatatataaatttataaacgataaaatgatgac 29101850  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 336 - 410
Target Start/End: Original strand, 4442126 - 4442200
Alignment:
Q  336 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgttatctttaagaaaaat 410  Q
    ||||||||||||||| ||||||| |||||||| ||||||||| ||||| ||| || | ||||| |||||||||||    
T  4442126 tatcataaatatttaaacaaaaaaatataaatctataaccaaaaaaataatggcatcattatcattaagaaaaat 4442200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 382
Target Start/End: Original strand, 10266447 - 10266511
Alignment:
Q  316 taagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaa 382  Q
    |||||||||||||| | |  ||||||||||||||||  ||||| || ||||||||||||||||||||    
T  10266447 taagtgggatcaagatcgtttatcataaatatttat--aaaaacatttaaatttataaccaataaaa 10266511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 382
Target Start/End: Original strand, 10285472 - 10285536
Alignment:
Q  316 taagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaa 382  Q
    |||||||||||||| | |  ||||||||||||||||  |||||||| |||||| |||||||||||||    
T  10285472 taagtgggatcaagatcgtttatcataaatatttat--aaaaatatttaaattcataaccaataaaa 10285536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 409
Target Start/End: Complemental strand, 11405965 - 11405858
Alignment:
Q  301 atccagaaattccgttaagtgggatcaaggttgcatatcataaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgttatctt 400  Q
    ||||||||||| |  |||||||| |||| |||   |||| ||||||||| || |||||||| |||||||||||| ||||||||||||||| | ||||| |    
T  11405965 atccagaaatttcaataagtggggtcaaagttatttatcttaaatatttcta-aaaaatatgtaaatttataacaaataaaatgatgacatcattatcat 11405867  T
Q  401 taagaaaaa 409  Q
    ||| |||||    
T  11405866 taacaaaaa 11405858  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 388
Target Start/End: Original strand, 26588155 - 26588207
Alignment:
Q  336 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 388  Q
    ||||||||||||||| ||||||||||||||| | ||||||| |||||||||||    
T  26588155 tatcataaatatttaaacaaaaatatataaaatcataaccattaaaatgatga 26588207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 388
Target Start/End: Original strand, 7732693 - 7732745
Alignment:
Q  336 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 388  Q
    ||||||||||||||| ||||||||||||||| | ||||||| |||||||||||    
T  7732693 tatcataaatatttaaacaaaaatatataaaatcataaccattaaaatgatga 7732745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 386
Target Start/End: Original strand, 24585721 - 24585769
Alignment:
Q  338 tcataaatatttatacaaaaatatataaatttataaccaataaaatgat 386  Q
    |||||||||||||||||||||||||||||   ||||||| |||||||||    
T  24585721 tcataaatatttatacaaaaatatataaaaccataaccattaaaatgat 24585769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 388
Target Start/End: Original strand, 5090494 - 5090544
Alignment:
Q  338 tcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 388  Q
    |||||||||||| ||||||||| ||| |||| ||||| |||||||||||||    
T  5090494 tcataaatatttttacaaaaatctatgaattcataacaaataaaatgatga 5090544  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 388
Target Start/End: Original strand, 14460178 - 14460230
Alignment:
Q  336 tatcataaatatttatacaaaaatatataaatttataaccaataaaatgatga 388  Q
    ||||||||||||||| |||||||||||||||   ||||||| |||||||||||    
T  14460178 tatcataaatatttaaacaaaaatatataaaaccataaccattaaaatgatga 14460230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 383
Target Start/End: Original strand, 29286097 - 29286143
Alignment:
Q  336 tatcataaatatttatacaaaaatatataaatttataaccaataaaat 383  Q
    |||| ||||||||||||||||| |||||||||||||||| ||||||||    
T  29286097 tatcttaaatatttatacaaaa-tatataaatttataactaataaaat 29286143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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