View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3638_low_10 (Length: 218)

Name: NF3638_low_10
Description: NF3638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3638_low_10
NF3638_low_10
[»] chr5 (11 HSPs)
chr5 (1-204)||(1163943-1164146)
chr5 (1-204)||(3299149-3299352)
chr5 (1-204)||(3392042-3392245)
chr5 (1-204)||(1849620-1849823)
chr5 (5-199)||(38987356-38987550)
chr5 (5-199)||(40417946-40418140)
chr5 (5-153)||(39726115-39726263)
chr5 (5-153)||(39879517-39879665)
chr5 (7-153)||(39168603-39168749)
chr5 (22-153)||(39399601-39399735)
chr5 (5-165)||(40596325-40596479)
[»] chr4 (1 HSPs)
chr4 (15-204)||(25912538-25912727)


Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 1163943 - 1164146
Alignment:
Q  1 ataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1163943 ataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaagg 1164042  T
Q  101 taaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1164043 taaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaat 1164142  T
Q  201 aatc 204  Q
    ||||    
T  1164143 aatc 1164146  T

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Target: chr5; HSP #2
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 3299352 - 3299149
Alignment:
Q  1 ataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaagg 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299352 ataccgagaacaacatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaagg 3299253  T
Q  101 taaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaat 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  3299252 taaatggatcaagcaaagtaaatattttggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaat 3299153  T
Q  201 aatc 204  Q
    ||||    
T  3299152 aatc 3299149  T

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Target: chr5; HSP #3
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 3392245 - 3392042
Alignment:
Q  1 ataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaagg 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392245 ataccgagaacaacatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaagg 3392146  T
Q  101 taaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaat 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  3392145 taaatggatcaagcaaagtaaatattttggcaaccctagtacaaatgacaataggaccaatatttggaccgaaagaagcagcaatatgactaggcagaat 3392046  T
Q  201 aatc 204  Q
    ||||    
T  3392045 aatc 3392042  T

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Target: chr5; HSP #4
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 1849823 - 1849620
Alignment:
Q  1 ataccgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaagg 100  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||  || ||||||||||||||||| |||||||||    
T  1849823 ataccgagaacaacatattccactaactgatgcctagagaatgaaggcgtgaagggtgcatcccagtaacgatcagcctttaagaaacagcgggtcaagg 1849724  T
Q  101 taaatggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaat 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1849723 taaatggatcaagcaaagtaaatgttctggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaat 1849624  T
Q  201 aatc 204  Q
    ||||    
T  1849623 aatc 1849620  T

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Target: chr5; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 199
Target Start/End: Complemental strand, 38987550 - 38987356
Alignment:
Q  5 cgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaa 104  Q
    |||||||| ||||||| |||||||||| ||||  ||||||| | ||||| ||||| | |||||| |||  ||| | ||||||||||||||||||||||||    
T  38987550 cgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaa 38987451  T
Q  105 tggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaa 199  Q
    |||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||||||| ||| ||||  ||||||||    
T  38987450 tggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaataggaccaatatttggacccaaagaagcaacaacattaggaggcagaa 38987356  T

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Target: chr5; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 5 - 199
Target Start/End: Complemental strand, 40418140 - 40417946
Alignment:
Q  5 cgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaa 104  Q
    |||||||| ||||||| |||||||||| ||||  ||||||| | ||||| ||||| | |||||| |||  ||| | ||||||||||||||||||||||||    
T  40418140 cgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaa 40418041  T
Q  105 tggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaa 199  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||  ||| ||||||||| ||| ||||  ||||||||    
T  40418040 tggatcaagcaaagtaaatgttttggcaaccctagtgcaaatgacaataggaccaatattttcaccgaaagaagcaacaacattaggaggcagaa 40417946  T

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Target: chr5; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 5 - 153
Target Start/End: Complemental strand, 39726263 - 39726115
Alignment:
Q  5 cgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaa 104  Q
    |||||||| ||||||| |||||||||| ||||  ||||||| | ||||| ||||| | |||||| |||  ||| | ||||||||||||||||||||||||    
T  39726263 cgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaa 39726164  T
Q  105 tggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaata 153  Q
    |||||||||||||||||||||||||||||||||||| || || ||||||    
T  39726163 tggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaata 39726115  T

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Target: chr5; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 5 - 153
Target Start/End: Complemental strand, 39879665 - 39879517
Alignment:
Q  5 cgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaa 104  Q
    |||||||| ||||||| |||||||||| ||||  ||||||| | ||||| ||||| | |||||| |||  ||| | ||||||||||||||||||||||||    
T  39879665 cgagaacaacatattcgactaactgagtcctattgaatgaatgtgtgaatggtgctttccagtactgatgagcatctaagaaacagtgggtcaaggtaaa 39879566  T
Q  105 tggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaata 153  Q
    |||||||||||||||||||||||||||||||||||| || || ||||||    
T  39879565 tggatcaagcaaagtaaatgttttggcaaccctagtgcatatgacaata 39879517  T

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Target: chr5; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 7 - 153
Target Start/End: Complemental strand, 39168749 - 39168603
Alignment:
Q  7 agaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatg 106  Q
    |||||| |||||| ||||||||||| ||||| ||||||| ||||||||||||||| |||||| | | ||||||||||| || |    |||||||||||||    
T  39168749 agaacaacatatttcactaactgagtcctagtgaatgaatgcgtgaagggtgcattccagtactcatcagcctttaaggaaaaagcagtcaaggtaaatg 39168650  T
Q  107 gatcaagcaaagtaaatgttttggcaaccctagtacaaataacaata 153  Q
    ||||||| ||||||| | |||||||||||||||| || |||||||||    
T  39168649 gatcaagtaaagtaatttttttggcaaccctagtgcatataacaata 39168603  T

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Target: chr5; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 39399735 - 39399601
Alignment:
Q  22 actaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagcaa---ag 118  Q
    |||||||||| ||||  ||||||| ||||||| ||||||| |||||| ||| ||||||||||| || |   ||||||||||||||||||||||||   ||    
T  39399735 actaactgagtcctattgaatgaatgcgtgaaaggtgcattccagtagtgatcagcctttaaggaaaaagcggtcaaggtaaatggatcaagcaaagtag 39399636  T
Q  119 taaatgttttggcaaccctagtacaaataacaata 153  Q
    ||| | |||||||||||||||| || || ||||||    
T  39399635 taatttttttggcaaccctagtgcatatgacaata 39399601  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 165
Target Start/End: Complemental strand, 40596479 - 40596325
Alignment:
Q  5 cgagaacagcatattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaa 104  Q
    |||| |||| ||||||||||||||||  ||||| || ||||||||||||  |||||| |||||| ||| || | ||||||| |||||   ||||||| ||    
T  40596479 cgagcacagaatattccactaactgactcctagtgagtgaaggcgtgaaaagtgcattccagtactgatcaacatttaagatacagtacctcaaggtgaa 40596380  T
Q  105 tggatcaagcaaagtaaatgttttggcaaccctagtacaaataacaataggaccaatattt 165  Q
       |||||||||||||| | |||| ||||||    ||||||| | |||||||| |||||||    
T  40596379 --aatcaagcaaagtaattcttttagcaacc----tacaaatgataataggactaatattt 40596325  T

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Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 25912538 - 25912727
Alignment:
Q  15 atattccactaactgaggcctagagaatgaaggcgtgaagggtgcatcccagtattgaccagcctttaagaaacagtgggtcaaggtaaatggatcaagc 114  Q
    |||||| |||||||||||||||| |||| |||||||||||||||||| |||||| ||| ||||||| |||||||| || ||||||||||||||||||||     
T  25912538 atattcaactaactgaggcctagtgaattaaggcgtgaagggtgcattccagtactgatcagccttcaagaaacaatgagtcaaggtaaatggatcaagt 25912637  T
Q  115 aaagtaaatgttttggcaaccctagtacaaataacaataggaccaatatttggacctaaagaagcagcaatattactaggcagaataatc 204  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||  ||  ||||||||||||| ||||  |||||||| ||||    
T  25912638 aaagtaaatgttttggcaaccctagtgcaaatgacaataggaccaatatttacactgaaagaagcagcaacattaggaggcagaaaaatc 25912727  T

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