View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3638_low_3 (Length: 374)
Name: NF3638_low_3
Description: NF3638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3638_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 9290386 - 9290049
Alignment:
| Q |
1 |
agttctttattcaatgtaaggtgtctagtttctcagaacaatcttatcaacattattgagaagaaaaagataaggattacttcctaatgttatggataaa |
100 |
Q |
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| T |
9290386 |
agttctttattcaatgtaaggtgtctagtttctcagaacaatcttatcaacattattgagaagaaaaagataaggattacttcctaatgttatggataaa |
9290287 |
T |
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| Q |
101 |
atataatttcaaacaggtcaaagatagtttccagtagaacagtcaagtacccacctgtcaatgttcacctttggttgtccaaatcatagggtgtccaaat |
200 |
Q |
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| T |
9290286 |
atataatttcaaacaggtcaaagatagtttccagtagaacagtcaagtacccacctgtcaatgtccacctttggttgtccaaa----------------t |
9290203 |
T |
|
| Q |
201 |
catttgtgtttttgctcttaatccaatttgaagatctctatggtgttttagactcccttcatgacctaagagtcgcattagagtcaggtttgactaaagg |
300 |
Q |
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| T |
9290202 |
catttgtgtttttgctcttaatccaatgtgaagatctctatcgtgttttagactcccttcatgacctaagagtcgcattagagtcgggtttgactaaagg |
9290103 |
T |
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| Q |
301 |
taaccgactctttgtatcaaaagtctatcctgtaatatggatgtcagatgatgt |
354 |
Q |
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| T |
9290102 |
taacctactctttgtatcaaaagtctatcctgtaatatggatgtcagatgatgt |
9290049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 186 - 344
Target Start/End: Complemental strand, 9294683 - 9294526
Alignment:
| Q |
186 |
atagggtgtccaaatcatttgtgtttttgctcttaatccaatttgaagatctctatggtgttttagactcccttcatgacctaagagtcgcattagagtc |
285 |
Q |
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| T |
9294683 |
atagggcgttcaaatcacttgtgttttcgctcttaattcaatgtgaaaatctctgtggtgttttagactcccttcatgacctaagagtcgtattagagtc |
9294584 |
T |
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| Q |
286 |
aggtttgactaaaggtaaccgactctttgtatcaaaagtctatcctgtaatatggatgt |
344 |
Q |
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| T |
9294583 |
aggtttgactaaaggtaaccgactc-ttgtatcaaatgtctatctggttatatggatgt |
9294526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 9294861 - 9294736
Alignment:
| Q |
21 |
gtgtctagtttctcagaacaatcttatcaacattattgagaagaaaaagataaggattacttcctaatgttatggataaaatataatttcaaacaggtca |
120 |
Q |
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| T |
9294861 |
gtgtctactttttctgaacaatcttatcaacattattgacaagcaaaatataaagattacttcctagcgttatgcataaaatataatttaaaacaggtca |
9294762 |
T |
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| Q |
121 |
aagatagtttccagtagaacagtcaa |
146 |
Q |
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| T |
9294761 |
aagaaacttagcaatagaacagtcaa |
9294736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 213 - 273
Target Start/End: Original strand, 9333881 - 9333941
Alignment:
| Q |
213 |
tgctcttaatccaatttgaagatctctatggtgttttagactcccttcatgacctaagagt |
273 |
Q |
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| T |
9333881 |
tgctcttaatacaatttgaatatctttgtggtgttttagactcctttaatgacctaagagt |
9333941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 314
Target Start/End: Original strand, 9307310 - 9307408
Alignment:
| Q |
216 |
tcttaatccaatttgaagatctctatggtgttttagactcccttcatgacctaagagtcgcattagagtcaggtttgactaaaggtaaccgactctttg |
314 |
Q |
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| T |
9307310 |
tcttaattcaatttgaagatctttgttgtgttttagactcctttaatgacttaagagttgcatcaaagcctagattgactgaaggtgaccgactctttg |
9307408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 51532453 - 51532513
Alignment:
| Q |
3 |
ttctttattcaatgtaaggtgtctagtttctcagaacaatcttatcaacattattgagaag |
63 |
Q |
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|||||||||| | ||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
51532453 |
ttctttattctttttaaggggtctactttctcagaacaatcttatcaacattattgagaag |
51532513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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