View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3638_low_5 (Length: 323)
Name: NF3638_low_5
Description: NF3638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3638_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 76 - 308
Target Start/End: Original strand, 30863966 - 30864198
Alignment:
| Q |
76 |
cacattacccatcctctaaaattccccttctcctcttacacatattgccaaaacccaaagaaaaaacctactattgtcggtaatgaaagctgcatcgggt |
175 |
Q |
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| T |
30863966 |
cacattacccatcctctaaaattccccttctcctcttacacatattgccaaaacccaaagaaaaaacctactattgtcggtaatgaaagctgcatcgggt |
30864065 |
T |
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| Q |
176 |
ggagaaccaccaccaccttcaataccatcagaaacaccaccggaggcagcacaaccacaaccttcatcaccagcaacaccaacaccaagccgctacgagt |
275 |
Q |
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| T |
30864066 |
ggagaaccaccaccaccgtcaataccatcagaaacaccaccggagacagcacaaccacaaccttcatcaccagcaacaccaacaccaagccgctacgagt |
30864165 |
T |
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| Q |
276 |
cacaaaagcgacgagactggaacacgttccaac |
308 |
Q |
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| T |
30864166 |
cacaaaagcgacgagactggaacacgttccaac |
30864198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 30863877 - 30863930
Alignment:
| Q |
3 |
tcattcattcaatccaattcattcatctaagctattttacgtcccatcatccaa |
56 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30863877 |
tcattcgttcaatccaattcattcatctaagctattttacgtcccatcacccaa |
30863930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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