View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3638_low_8 (Length: 299)
Name: NF3638_low_8
Description: NF3638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3638_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 20 - 290
Target Start/End: Original strand, 46144100 - 46144372
Alignment:
| Q |
20 |
taagattatttgaatccaatgagaannnnnnngcattgacctataacatttttaaaagaaatggccaa--tcaagagtatcatagccgttagctacaaca |
117 |
Q |
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| T |
46144100 |
taagattatttgaatccaatgagaatttttttgcattgacctataacatttttaaaagaaatggccaaaatcaggagtatcatagccgttagctacaaca |
46144199 |
T |
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| Q |
118 |
attttgaaagcaagattatctccaaaaaatttcttgtgcaacaagttaatggcttcaaaagttaagcaaatataatcccctataagtaagcctttataaa |
217 |
Q |
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| T |
46144200 |
attttgaaagcaagattatctccaaaaaaattcttgtgcaacaagttaatggcttcaaaagttaagcaaatataatcccctataagtaagcctttataaa |
46144299 |
T |
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| Q |
218 |
tccccttttagagatgacgtgagacataatcgtagcttcattttcttattaaataagtagccactagaattat |
290 |
Q |
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| T |
46144300 |
tccccttttagagatgacgtgagacataatcgtagcttcattttcttattaaataagtagccactagaattat |
46144372 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 166
Target Start/End: Complemental strand, 22213754 - 22213666
Alignment:
| Q |
78 |
aaatggccaatcaagagtatcatagccgttagctacaacaattttgaaagcaagattatctccaaaaaatttcttgtgcaacaagttaa |
166 |
Q |
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||||||||| ||||||||||||||| | |||| | | | || |||||||||| |||| ||||| || ||||||| || |||||||||| |
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| T |
22213754 |
aaatggccactcaagagtatcataggctttagagatatctatcttgaaagcaatattacctccataagatttcttctgtaacaagttaa |
22213666 |
T |
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