View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3638_low_9 (Length: 236)
Name: NF3638_low_9
Description: NF3638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3638_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 43155169 - 43155386
Alignment:
| Q |
1 |
tagtatttctagctaaaaagtgaaaacagaacaatcaatccaatcgcaaaaaccaaacttcaaaattaaattactactaacaatacaattgaggcctctc |
100 |
Q |
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| T |
43155169 |
tagtatttctagctaaaaagtgaaaacagaacaatcaatccaatcgcaaaaaccaaactttaaaattaaattactactaacaatacaattgaggcccctc |
43155268 |
T |
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| Q |
101 |
gaatagttatcttaattcacagctaaaaacaaactgagttatgtcacatttaattcatgggacagaacctataaaacacaagacacagacatcaaacacc |
200 |
Q |
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| T |
43155269 |
gaatagttatcttaattcacagctaaaaacaaactgagttatgtcacatttaattcatgggacagaacctataaaacacaagacacagacatcaaacacc |
43155368 |
T |
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| Q |
201 |
acacaaatacataggtgt |
218 |
Q |
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|||||||||||||||||| |
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| T |
43155369 |
acacaaatacataggtgt |
43155386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 22 - 190
Target Start/End: Original strand, 18035473 - 18035639
Alignment:
| Q |
22 |
gaaaacagaacaatcaatccaatcgcaaaaaccaaacttcaaaattaaattactactaacaatacaattgaggcctctcgaatagttatcttaattcaca |
121 |
Q |
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|||||||||| |||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| || || || || |||| ||||||||| |
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| T |
18035473 |
gaaaacagaaaaatcaatccaattgcaaaaaccaaactt------taaatcactactaacaatacaattgagacccctacaagagatatcctaattcaca |
18035566 |
T |
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| Q |
122 |
gc---taaaaacaaactgagttatgtcacatttaattcatgggacagaacctataaaaca-caagacacagac |
190 |
Q |
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| T |
18035567 |
acaattaaaaacaaactgagttatgtcacatttaattcatgggacagaaccaataaaacaccaagacacagac |
18035639 |
T |
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